MUSS0211, MUSS0211 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUSS0211
AliasMUSS211
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifCTG(7)
PCR ConditionAnnealing temperature: 55
Primer 1MUSS211_F: TCAGCTGAGGGAATCTACGG
Primer 2MUSS211_R: TCATCCTATTCCCGATCACC
Product Length152
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:2605840..2606328 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:3931234..3931712 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:3006002..3006501 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:2976168..2976646 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:2852307..2852806 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:3064146..3064623 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:57863138..57863637 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:4117118..4117615 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold732.1supercontigscaffold732.1:151410..151888 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3420.1supercontigscaffold3420.1:95762..96250 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:2608232..2608720 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:2685362..2685840 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:3057688..3058176 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:3243294..3243772 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:2884959..2885447 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:3109309..3109787 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:3052436..3052924 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:3246081..3246559 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:2927371..2927859 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:3198242..3198720 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At01chromosomeAt01:2777672..2778150 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At01chromosomeAt01:2772752..2773230 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18654supercontigscaffold18654:93729..94207 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18654supercontigscaffold18654:88809..89287 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1094supercontigscaffold1094:828743..829242 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:3236091..3236590 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:2965570..2966048 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:3266696..3267195 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:2965057..2965535 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:3111849..3112337 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:3501788..3502266 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:2988333..2988833 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:2987209..2987687 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:3247286..3247785 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:2994676..2995154 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:3094275..3094763 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D01chromosomeD01:3084048..3084535 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:3243723..3244201 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:3047074..3047549 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:2973154..2973631 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:2833035..2833534 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:3041264..3041765 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:2965265..2965758 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:2585036..2585535 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:2714522..2715167 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:3184722..3185221 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:2654322..2654814 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:2148543..2149037 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:2653616..2654115 -Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:3861581..3862082 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:2746400..2746900 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:196400770..196401241 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A01N/A37.8MUSS211View
Sequence
>MUSS0211 ID=MUSS0211; Name=MUSS0211; organism=Gossypium arboreum; type=genetic_marker; length=152bp
TCAGCTGAGGGAATCTACGGCTTCCGAGGAGGCGAACTACTGCTGCTGCT
GTTGCTGCTGCTTCTTCTTCCTCTCAATGGCCTCCTAGGACTGCGACTCC
TTGAAACCCTTCGTCCTGCCTTTCGGGGACTGGGTGATCGGGAATAGGAT
GA