NAU2235, NAU2235 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2235
Genbank IDDT048252
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT048252.1
Source TypeEST
Repeat MotifAAT(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2235_F: AGCTCACACAGATGAGTTTGTT
Primer 2NAU2235_R: CCATGGGTATGGATTTCTTC
Product Length152
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT048252
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_931supercontigscaffold_931:10196..10351 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D04chromosomeD04:55924659..55924811 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:53736173..53736322 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:80321889..80322044 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:563216..563368 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:636284..636444 -Gossypioides kirkii genome ISU_v3n/a
tig00015727_CRI-A2_v1.0.a1chromosometig00015727_CRI-A2_v1.0.a1:669794..669964 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold804.1supercontigscaffold804.1:727745..727900 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr7chromosomeDt_chr7:2066512..2066664 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:50890074..50890226 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold1020_A04supercontigscaffold1020_A04:19131..19286 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:55724859..55725012 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:84444149..84444304 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:87083700..87083855 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:55561888..55562040 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:83961543..83961698 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:53648176..53648328 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:80353857..80354012 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold10592supercontigscaffold10592:30043..30198 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3012supercontigscaffold3012:511275..511424 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:51833753..51833902 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:80921486..80921641 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:56731450..56731599 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:81329543..81329701 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:53850782..53850928 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:82815432..82815602 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:56744982..56745131 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:91787332..91787484 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:53861506..53861655 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:81475744..81475902 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:57557388..57557540 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:88519004..88519159 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:108905118..108905267 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:110727265..110727435 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:565168..565320 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:639603..639764 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:53651939..53652091 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_12chromosomeChr_12:23439271..23439424 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:53646630..53646785 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:27705197..27705349 +Gossypium aridum (D4) genome ISU_v1n/a
Chr12chromosomeChr12:21353399..21353557 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:27204940..27205092 +Gossypium lobatum (D7) genome ISU_v1n/a
F04chromosomeF04:90450664..90450810 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT048252.1DT048252.1Gossypium hirsutumsequence_feature


Image
File NameLegend
45_FISH_GEN-178-1117_fig2.jpgBAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117]
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch22_Dt.04N/A31.26NAU2235View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch22_Dt.04N/A0NAU2235View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch04_At.04N/A5.05NAU2235View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch22_Dt.04N/A3.59NAU2235View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch04_At.04N/A3.49NAU2235View
6AD-genome wide Reference Map (2009)AD_ch04_At.04N/A16NAU2235View
7AD-genome wide Reference Map (2009)AD_ch22_Dt.04N/A65NAU2235View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch04_At.04N/A113.4NAU2235View
9TM-1 x Hai-7124, BC1 (2007)AD_ch04_At.04N/A111.7NAU2235-155View
10TM-1 x Hai-7124, BC1 (2008)AD_ch04_At.04N/A113.01NAU2235-155View
11TM-1 x Hai-7124, BC1 (2012)AD_ch04_At.04N/A14.1NAU2235-155View
Sequence
>NAU2235 ID=NAU2235; Name=NAU2235; organism=Gossypium hirsutum; type=genetic_marker; length=152bp
AGCTCACACAGATGAGTTTGTTATAGTGCATCCTAATTAAAAACACAAAG
TTACAATAATAATAATAATAATAAATCCATGGCACTACATATTTCTTTTG
TTTCATACAATAACATAAAATAAGTTTCTTATGAAGAAATCCATACCCAT
GG