TMB0283, TMB0283 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0283
AliasTMJ24
Genbank IDBV679332
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679332.1
Source Typegenomic
Repeat Motif(CA)20
PCR ConditionAnnealing temperature: 55
Primer 1TMB0283_F: GGCTCCAAAATTGAAACGTG
Primer 2TMB0283_R: GTGGACATTGGCATTCATTG
Product Length191
PolymorphismP_ TMB0283
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679332
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:9721558..9721730 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:9694326..9694482 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:9317182..9317373 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:51171457..51171639 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:15936341..15936497 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold813.1supercontigscaffold813.1:448360..449328 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:8890111..8890283 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:10185452..10185624 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:9999209..9999381 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:9715331..9715521 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:10073842..10074014 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8424supercontigscaffold8424:16096..16254 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:10404696..10404854 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:10114013..10114185 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:9939400..9939574 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:10819033..10819187 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:10117340..10117498 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:10385132..10385304 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:9169921..9170114 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_02chromosomeChr_02:8154979..8155165 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:10036241..10036467 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:10209514..10209672 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:9281431..9281589 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:14266751..14266925 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679332.1BV679332.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch15_Dt.01N/A41.5TMJ24aView
27235 x TM-1, RIL (2007)AD_ch15_Dt.01N/A41.5TMJ24bView
3JLZM x ZJXSLS, F2 (2008)A_JZ_A01N/A108.4TMJ24View
47235 x TM-1, F2:3 (2005)AD_ch15_Dt.01N/A71.5TMJ24View
5AD-genome wide Reference Map (2009)AD_ch01_At.01N/A137tmb0283View
6AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A149tmb0283View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A37.9tmb0283View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A138.7tmb0283View
9TM-1 x 3-79, RIL (2012)AD_ch01_At.01N/A38.98TMB0283bView
10TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A105.4TMB0283bView
11TM-1 x 3-79, RIL (2012)AD_ch15_Dt.01N/A44.69TMB0283aView
12TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A75.2TMB0283aView
13TM-1 x Hai-7124, BC1 (2007)AD_ch01_At.01N/A55.4TMJ24-170View
14TM-1 x Hai-7124, BC1 (2008)AD_ch01_At.01N/A59.98TMJ24-170View
15TM-1 x Hai-7124, BC1 (2012)AD_ch01_At.01N/A74.2TMJ24-170View
16Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch01_At.01N/A55.2TMJ240-170View
17Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch01_At.01N/A61.7TMJ240-190View
18CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A106TMB0283View
19TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A105.4TMB0283bView
20TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A75.21TMB0283aView
Sequence
>TMB0283 ID=TMB0283; Name=TMB0283; organism=Gossypium hirsutum; type=genetic_marker; length=191bp
GGCTCCAAAATTGAAACGTGTTCCAACTCAACTAATATGCGCATACACAC
ACACACACACACACACACACACACACACACACACATCTATATCTATATCT
ATATCTATATCTATATCTATATCTATATTGCGAGACATTTTACAAACTGT
AAGACTTAGAGGCAAAGTCGGCAATGAATGCCAATGTCCAC