Expression: G. raimondii plant tissues used as references in V. dahliae resistance study

Overview
Analysis NameExpression: G. raimondii plant tissues used as references in V. dahliae resistance study
MethodIllumina HiSeq 4000 (Gr), StringTie, and Ballgown
SourcePRJNA507768
Date performed2018-11-30

This data is from the following manuscript: Dong Q, Magwanga RO, Cai X, Lu P, Nyangasi Kirungu J, Zhou Z, Wang X, Wang X, Xu Y, Hou Y, Wang K, Peng R, Ma Z, Liu F. RNA-Sequencing, Physiological and RNAi Analyses Provide Insights into the Response Mechanism of the ABC-Mediated Resistance to Verticillium dahliae Infection in Cotton. Genes. 2019 Feb 01; 10(2):110.  NCBI BioProject PRJNA507768, GEO Series accession number GSE123175.  Expression values are in FPKM.

 

sample colected at 0 hour after Verticillium dahliae inoculation

BioSample name tissue dev_stage treatment
  Gr_0L1   leaf   one true leaf stage sample collected at 0 hour after Verticillium dahliae inoculation
  Gr_0L2   leaf   one true leaf stage sample collected at 0 hour after Verticillium dahliae inoculation
  Gr_0L3   leaf   one true leaf stage sample collected at 0 hour after Verticillium dahliae inoculation
  Gr_0R1   root   one true leaf stage sample collected at 0 hour after Verticillium dahliae inoculation
  Gr_0R2   root   one true leaf stage sample collected at 0 hour after Verticillium dahliae inoculation
  Gr_0R3   root   one true leaf stage sample collected at 0 hour after Verticillium dahliae inoculation
  Gr_0S1   stem   one true leaf stage sample collected at 0 hour after Verticillium dahliae inoculation
  Gr_0S2   stem   one true leaf stage sample collected at 0 hour after Verticillium dahliae inoculation
  Gr_0S3   stem   one true leaf stage sample collected at 0 hour after Verticillium dahliae inoculation
  Gr_12L1   leaf   one true leaf stage sample collected at 12 hour after Verticillium dahliae inoculation
  Gr_12L2   leaf   one true leaf stage sample collected at 12 hour after Verticillium dahliae inoculation
  Gr_12L3   leaf   one true leaf stage sample collected at 12 hour after Verticillium dahliae inoculation
  Gr_12R1   root   one true leaf stage sample collected at 12 hour after Verticillium dahliae inoculation
  Gr_12R2   root   one true leaf stage sample collected at 12 hour after Verticillium dahliae inoculation
  Gr_12R3   root   one true leaf stage sample collected at 12 hour after Verticillium dahliae inoculation
  Gr_12S1   stem   one true leaf stage sample collected at 12 hour after Verticillium dahliae inoculation
  Gr_12S2   stem   one true leaf stage sample collected at 12 hour after Verticillium dahliae inoculation
  Gr_12S3   stem   one true leaf stage sample collected at 12 hour after Verticillium dahliae inoculation
  Gr_48L1   leaf   one true leaf stage sample collected at 48 hour after Verticillium dahliae inoculation
  Gr_48L2   leaf   one true leaf stage sample collected at 48 hour after Verticillium dahliae inoculation
  Gr_48L3   leaf   one true leaf stage sample collected at 48 hour after Verticillium dahliae inoculation
  Gr_48R1   root   one true leaf stage sample collected at 48 hour after Verticillium dahliae inoculation
  Gr_48R2   root   one true leaf stage sample collected at 48 hour after Verticillium dahliae inoculation
  Gr_48R3   root   one true leaf stage sample collected at 48 hour after Verticillium dahliae inoculation
  Gr_48S1   stem   one true leaf stage sample collected at 48 hour after Verticillium dahliae inoculation
  Gr_48S2   stem   one true leaf stage sample collected at 48 hour after Verticillium dahliae inoculation
  Gr_48S3   stem   one true leaf stage sample collected at 48 hour after Verticillium dahliae inoculation

 

 

Properties
Additional information about this analysis:
Property NameValue
Data source filepublic://expression/65131284dbf07_p20174_27Gr_exp_FPKM_TSV.txt
Publication

Dong Q, Magwanga RO, Cai X, Lu P, Nyangasi Kirungu J, Zhou Z, Wang X, Wang X, Xu Y, Hou Y, Wang K, Peng R, Ma Z, Liu F. RNA-Sequencing, Physiological and RNAi Analyses Provide Insights into the Response Mechanism of the ABC-Mediated Resistance to Verticillium dahliae Infection in Cotton. Genes. 2019 Feb 01; 10(2):110.