Expression: Root-Knot Nematode resistance in Gossypium hirsutum

Overview
Analysis NameExpression: Root-Knot Nematode resistance in Gossypium hirsutum
MethodIllumina HiSeq 2500 (Gh), Illumina MiSeq (Gh), edgeR, DEseq2
SourcePRJNA787300
Date performed2021-12-09

This data is from the following manuscript:  Ojeda-Rivera JO, Ulloa M, Roberts PA, Kottapalli P, Wang C, Nájera-González HR, Payton P, Lopez-Arredondo D, Herrera-Estrella L. Root-Knot Nematode Resistance in Gossypium hirsutum Determined by a Constitutive Defense-Response Transcriptional Program Avoiding a Fitness Penalty.. Frontiers in plant science. 2022; 13:858313. NCBI BioProject PRJNA787300.  .

 

Biosample name cultivar tissue age treatment
 NemX_ctl1  Acala NemX  root  23 days old plant  RKN not infected
 NemX_ctl2  Acala NemX  root  23 days old plant  RKN not infected
 NemX_ctl3  Acala NemX  root  23 days old plant  RKN not infected
 NemX_rkn1  Acala NemX  root  23 days old plant  RKN (M. incognita) infested
 NemX_rkn2  Acala NemX  root  23 days old plant  RKN (M. incognita) infested
 NemX_rkn3  Acala NemX  root  23 days old plant  RKN (M. incognita) infested
 SJ2_ctl1  Acala SJ2  root  23 days old plant  RKN not infected
 SJ2_ctl2  Acala SJ2  root  23 days old plant  RKN not infected
 SJ2_ctl3  Acala SJ2  root  23 days old plant  RKN not infected
 SJ2_rkn1  Acala SJ2  root  23 days old plant  RKN (M. incognita) infested
 SJ2_rkn2  Acala SJ2  root  23 days old plant  RKN (M. incognita) infested
 SJ2_rkn3  Acala SJ2  root  23 days old plant  RKN (M. incognita) infested
 WMJJ_clt1  Wild Mexico Jack Jones  root  23 days old plant  RKN not infected
 WMJJ_clt2  Wild Mexico Jack Jones  root  23 days old plant  RKN not infested
 WMJJ_clt3  Wild Mexico Jack Jones  root  23 days old plant  RKN not infected
 WMJJ_rkn1  Wild Mexico Jack Jones  root  23 days old plant  RKN (M. incognita) infested
 WMJJ_rkn2  Wild Mexico Jack Jones  root  23 days old plant  RKN (M. incognita) infested
 WMJJ_rkn3  Wild Mexico Jack Jones  root  23 days old plant  RKN (M. incognita) infested

 

Properties
Additional information about this analysis:
Property NameValue
Data source filepublic://expression/65168534b1c44_p22813_EXP_TSV.txt
Publication

Ojeda-Rivera JO, Ulloa M, Roberts PA, Kottapalli P, Wang C, Nájera-González HR, Payton P, Lopez-Arredondo D, Herrera-Estrella L. Root-Knot Nematode Resistance in Gossypium hirsutum Determined by a Constitutive Defense-Response Transcriptional Program Avoiding a Fitness Penalty.. Frontiers in plant science. 2022; 13:858313.