Construction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.)

Publication Overview
TitleConstruction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.)
AuthorsTang S, Teng Z, Zhai T, Fang X, Liu F, Liu D, Zhang J, Liu D, Wang S, Zhang K, Shao Q
TypeJournal Article
Journal NameEuphytica
Volume201
Issue2
Year2015
Page(s)195 213
CitationTang S, Teng Z, Zhai T, Fang X, Liu F, Liu D, Zhang J, Liu D, Wang S, Zhang K, Shao Q. Construction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.). Euphytica. 2015 Jan 1;201(2):195-213.
Publication CodeEUP-201-195

Abstract

Cotton fiber quality traits are controlled by multiple genes of minor effect. Identification of significant and stable quantitative trait loci (QTL) across environments and populations lays foundation for marker-assisted selection for fiber quality improvement and studies of its molecular regulation. Here, a detailed genetic map is constructed and QTL are detected based on an intraspecific recombinant inbred line population derived from a cross between Upland cotton cultivar/line Yumian 1 and 7235. A total of 25,313 SSR primer pairs, including 5,000 developed from G. raimondii BAC-ends sequences, were used to construct the genetic map which finally contained 1,540 loci, spanning 2,842.06 cM, with an average of 1.85 cM between adjacent markers. With 4 year fiber quality traits data, variance analysis revealed that they were significantly affected by genetic and environmental factors. Significant correlations were also detected between them. A total of 62 QTL were identified with combined analysis and single environment analysis. These QTL explain phenotypic variation from 5.0 to 28.1 %. For each trait, favorable alleles were conferred by both parents. Seventeen QTL were detected in more than one environment. The genetic map and stable QTL are valuable for Upland cotton genome research and breeding projects to improve fiber quality.
Features
This publication contains information about 7,003 features:
Feature NameUniquenameType
PGML3005PGML3005genetic_marker
PGML3006PGML3006genetic_marker
PGML3007PGML3007genetic_marker
PGML3008PGML3008genetic_marker
PGML3009PGML3009genetic_marker
PGML3010PGML3010genetic_marker
PGML3011PGML3011genetic_marker
PGML3012PGML3012genetic_marker
PGML3013PGML3013genetic_marker
PGML3014PGML3014genetic_marker
PGML3015PGML3015genetic_marker
PGML3016PGML3016genetic_marker
PGML3017PGML3017genetic_marker
PGML3018PGML3018genetic_marker
PGML3019PGML3019genetic_marker
PGML3020PGML3020genetic_marker
PGML3021PGML3021genetic_marker
PGML3022PGML3022genetic_marker
PGML3023PGML3023genetic_marker
PGML3024PGML3024genetic_marker
PGML3025PGML3025genetic_marker
PGML3026PGML3026genetic_marker
PGML3027PGML3027genetic_marker
PGML3028PGML3028genetic_marker
PGML3029PGML3029genetic_marker

Pages

Projects
This publication contains information about 1 projects:
Project NameDescription
Y7-RIL-2015
Featuremaps
This publication contains information about 1 maps:
Map Name
Yumian-1 x 7235, RIL (2015)
Properties
Additional details for this publication include:
Property NameValue
URLhttps://link.springer.com/article/10.1007/s10681-014-1189-y
Accepted Date9 June 2014
Publication CodeEUP-201-195
Publication Date2015 Jan 1
KeywordsUpland cotton; RIL population; Genetic map; Fiber quality traits; QTL