Construction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.)

Publication Overview
TitleConstruction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.)
AuthorsTang S, Teng Z, Zhai T, Fang X, Liu F, Liu D, Zhang J, Liu D, Wang S, Zhang K, Shao Q
TypeJournal Article
Journal NameEuphytica
Volume201
Issue2
Year2015
Page(s)195 213
CitationTang S, Teng Z, Zhai T, Fang X, Liu F, Liu D, Zhang J, Liu D, Wang S, Zhang K, Shao Q. Construction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.). Euphytica. 2015 Jan 1;201(2):195-213.
Publication CodeEUP-201-195

Abstract

Cotton fiber quality traits are controlled by multiple genes of minor effect. Identification of significant and stable quantitative trait loci (QTL) across environments and populations lays foundation for marker-assisted selection for fiber quality improvement and studies of its molecular regulation. Here, a detailed genetic map is constructed and QTL are detected based on an intraspecific recombinant inbred line population derived from a cross between Upland cotton cultivar/line Yumian 1 and 7235. A total of 25,313 SSR primer pairs, including 5,000 developed from G. raimondii BAC-ends sequences, were used to construct the genetic map which finally contained 1,540 loci, spanning 2,842.06 cM, with an average of 1.85 cM between adjacent markers. With 4 year fiber quality traits data, variance analysis revealed that they were significantly affected by genetic and environmental factors. Significant correlations were also detected between them. A total of 62 QTL were identified with combined analysis and single environment analysis. These QTL explain phenotypic variation from 5.0 to 28.1 %. For each trait, favorable alleles were conferred by both parents. Seventeen QTL were detected in more than one environment. The genetic map and stable QTL are valuable for Upland cotton genome research and breeding projects to improve fiber quality.
Features
This publication contains information about 7,003 features:
Feature NameUniquenameType
SWU07-227SWU07-227genetic_marker
SWU07-228SWU07-228genetic_marker
SWU07-229SWU07-229genetic_marker
SWU07-230SWU07-230genetic_marker
SWU07-231SWU07-231genetic_marker
SWU07-232SWU07-232genetic_marker
SWU07-233SWU07-233genetic_marker
SWU07-234SWU07-234genetic_marker
SWU07-235SWU07-235genetic_marker
SWU07-236SWU07-236genetic_marker
SWU07-237SWU07-237genetic_marker
PGML4892PGML4892genetic_marker
SWU01490SWU01490genetic_marker
fiber lengthqUHML.Y7-RIL_ch19.bb11QTL
fiber uniformityqFU.Y7-RIL_ch06.bb09-12QTL
fiber elongationqFEL.Y7-RIL_ch26.bb12QTL
micronaireqMIC.Y7-RIL_ch23.bb10QTL
fiber elongationqFEL.Y7-RIL_ch24.bb12QTL
fiber strengthqFS.Y7-RIL_ch24.bb12QTL
fiber uniformityqFU.Y7-RIL_ch24.bb12QTL
fiber elongationqFEL.Y7-RIL_ch24.bb10QTL
fiber strengthqFS.Y7-RIL_ch10.bb09-12QTL
micronaireqMIC.Y7-RIL_ch13.bb09QTL
micronaireqMIC.Y7-RIL_ch15.bb09QTL
micronaireqMIC.Y7-RIL_ch15.bb09-12QTL

Pages

Projects
This publication contains information about 1 projects:
Project NameDescription
Y7-RIL-2015
Featuremaps
This publication contains information about 1 maps:
Map Name
Yumian-1 x 7235, RIL (2015)
Properties
Additional details for this publication include:
Property NameValue
URLhttps://link.springer.com/article/10.1007/s10681-014-1189-y
Accepted Date9 June 2014
Publication CodeEUP-201-195
Publication Date2015 Jan 1
KeywordsUpland cotton; RIL population; Genetic map; Fiber quality traits; QTL