g.arboreum_cottongen_reftransV1_0006523, g.arboreum_cottongen_reftransV1_0006523 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006523 vs. ExPASy TrEMBL
Match: I1JF25_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 410.994 bits (1055), Expect = 2.265e-140 Identity = 190/249 (76.31%), Postives = 214/249 (85.94%), Query Frame = -3 Query: 3 KIMFVGDSLSLNMWESMACMIHASVPNSKTTFVRKSPLSFVIFEDYGVTLYLYRTPYLVDIVKENVGDVLNLGSIKGGNAWIGMDLLIFNSWHWWTHKGKSQGWDYIRDGSALYKDMNRLEAYNKGLATWANWVDTNVDQTKTKVFFQGISPTHYEGREWNQPKKSCYGEQEPLSGTTYQAGAPPAAAIVNKVLGSMNKPVYLLDITTLSQLRKDAHPSTYSGDHSGNDCSHWCLPGLPDTWNQLLYAA 749 KIMFVGDSLSLNMWES++CM+HASVPN+ T+FVR+ +S V FEDYGVT+ LYRTPYLVDI +E+VG VL L SIK G+AW GMD+LIFNSWHWWTHKG SQGWDYIRDGS L KDM+RL+A+ KGL TWA WVD N+D KTKV FQGISPTHY+G+EWNQP+KSC GE EPL+G+TY AG PPAA IVNKVL +M VYLLDIT LSQLRKDAHPS Y DH+GNDCSHWCLPGLPDTWN+LLYAA Sbjct: 120 KIMFVGDSLSLNMWESLSCMLHASVPNATTSFVRRQAISTVTFEDYGVTIQLYRTPYLVDIDREDVGRVLTLNSIKAGDAWTGMDMLIFNSWHWWTHKGDSQGWDYIRDGSNLVKDMDRLDAFFKGLTTWAGWVDQNIDLNKTKVLFQGISPTHYQGQEWNQPRKSCSGELEPLAGSTYPAGLPPAANIVNKVLKNMKNQVYLLDITLLSQLRKDAHPSVYGVDHTGNDCSHWCLPGLPDTWNELLYAA 368
BLAST of g.arboreum_cottongen_reftransV1_0006523 vs. ExPASy TrEMBL
Match: X2KY70_CITSI (TBL1 OS=Citrus sinensis PE=2 SV=1) HSP 1 Score: 410.609 bits (1054), Expect = 3.157e-140 Identity = 191/249 (76.71%), Postives = 214/249 (85.94%), Query Frame = -3 Query: 3 KIMFVGDSLSLNMWESMACMIHASVPNSKTTFVRKSPLSFVIFEDYGVTLYLYRTPYLVDIVKENVGDVLNLGSIKGGNAWIGMDLLIFNSWHWWTHKGKSQGWDYIRDGSALYKDMNRLEAYNKGLATWANWVDTNVDQTKTKVFFQGISPTHYEGREWNQPKKSCYGEQEPLSGTTYQAGAPPAAAIVNKVLGSMNKPVYLLDITTLSQLRKDAHPSTYSGDHSGNDCSHWCLPGLPDTWNQLLYAA 749 +IMFVGDSLSLNMWES++CMIHASVPN+KT+FVRK LS V FE+YGVT LYRTPYLVDIVK+ VG VL L SI+ G W MD+LIFNSWHWWTH GK+Q WDYI+DG L KDM+RLEA+ KG++TWA WVD +VD +KTKVFFQGISPTHY G+EWN KK+C GE EPLSG+TY GAPPAA++VNKVL +NKPVYLLDITTLSQLRKDAHPSTYSG HSG DCSHWCLPGLPDTWNQLLYAA Sbjct: 115 RIMFVGDSLSLNMWESLSCMIHASVPNAKTSFVRKETLSSVSFEEYGVTFLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLDVDPSKTKVFFQGISPTHYTGKEWNSRKKNCLGELEPLSGSTYPGGAPPAASVVNKVLSPINKPVYLLDITTLSQLRKDAHPSTYSGKHSGTDCSHWCLPGLPDTWNQLLYAA 363
BLAST of g.arboreum_cottongen_reftransV1_0006523 vs. ExPASy TrEMBL
Match: A0A067GDZ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017263mg PE=4 SV=1) HSP 1 Score: 410.223 bits (1053), Expect = 5.422e-140 Identity = 192/249 (77.11%), Postives = 215/249 (86.35%), Query Frame = -3 Query: 3 KIMFVGDSLSLNMWESMACMIHASVPNSKTTFVRKSPLSFVIFEDYGVTLYLYRTPYLVDIVKENVGDVLNLGSIKGGNAWIGMDLLIFNSWHWWTHKGKSQGWDYIRDGSALYKDMNRLEAYNKGLATWANWVDTNVDQTKTKVFFQGISPTHYEGREWNQPKKSCYGEQEPLSGTTYQAGAPPAAAIVNKVLGSMNKPVYLLDITTLSQLRKDAHPSTYSGDHSGNDCSHWCLPGLPDTWNQLLYAA 749 +IMFVGDSLSLNMWES++CMIHASVPN+KT+FVRK LS V FE+YGVTL LYRTPYLVDIVK+ VG VL L SI+ G W MD+LIFNSWHWWTH GK+Q WDYI+DG L KDM+RLEA+ KG++TWA WVD NVD ++TKVFFQGISPTHY G+EWN KK+C GE EPLSG+TY GAPPAA++VNKVL S+NKPVYLLDITTLSQLRKDAHPSTYSG HSG DCSHWCLPGLPDT NQLLYAA Sbjct: 115 RIMFVGDSLSLNMWESLSCMIHASVPNAKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISPTHYTGKEWNSRKKNCLGELEPLSGSTYPGGAPPAASVVNKVLSSINKPVYLLDITTLSQLRKDAHPSTYSGKHSGTDCSHWCLPGLPDTRNQLLYAA 363
BLAST of g.arboreum_cottongen_reftransV1_0006523 vs. ExPASy TrEMBL
Match: A0A067GQW8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017263mg PE=4 SV=1) HSP 1 Score: 409.838 bits (1052), Expect = 7.012e-140 Identity = 193/251 (76.89%), Postives = 216/251 (86.06%), Query Frame = -3 Query: 3 KIMFVGDSLSLNMWESMACMIHASVPNSKTTFVRKSPLSFVIFEDYGVTLYLYRTPYLVDIVKENVGDVLNLGSIKGGNAWIGMDLLIFNSWHWWTHKGKSQ--GWDYIRDGSALYKDMNRLEAYNKGLATWANWVDTNVDQTKTKVFFQGISPTHYEGREWNQPKKSCYGEQEPLSGTTYQAGAPPAAAIVNKVLGSMNKPVYLLDITTLSQLRKDAHPSTYSGDHSGNDCSHWCLPGLPDTWNQLLYAA 749 +IMFVGDSLSLNMWES++CMIHASVPN+KT+FVRK LS V FE+YGVTL LYRTPYLVDIVK+ VG VL L SI+ G W MD+LIFNSWHWWTH GK+Q WDYI+DG L KDM+RLEA+ KG++TWA WVD NVD ++TKVFFQGISPTHY G+EWN KK+C GE EPLSG+TY GAPPAA++VNKVL S+NKPVYLLDITTLSQLRKDAHPSTYSG HSG DCSHWCLPGLPDTWNQLLYAA Sbjct: 115 RIMFVGDSLSLNMWESLSCMIHASVPNAKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVLIFNSWHWWTHTGKAQPRRWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISPTHYTGKEWNSRKKNCLGELEPLSGSTYPGGAPPAASVVNKVLSSINKPVYLLDITTLSQLRKDAHPSTYSGKHSGTDCSHWCLPGLPDTWNQLLYAA 365
BLAST of g.arboreum_cottongen_reftransV1_0006523 vs. ExPASy TrEMBL
Match: A0A0B2RKF9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_032520 PE=4 SV=1) HSP 1 Score: 409.068 bits (1050), Expect = 1.281e-139 Identity = 189/249 (75.90%), Postives = 213/249 (85.54%), Query Frame = -3 Query: 3 KIMFVGDSLSLNMWESMACMIHASVPNSKTTFVRKSPLSFVIFEDYGVTLYLYRTPYLVDIVKENVGDVLNLGSIKGGNAWIGMDLLIFNSWHWWTHKGKSQGWDYIRDGSALYKDMNRLEAYNKGLATWANWVDTNVDQTKTKVFFQGISPTHYEGREWNQPKKSCYGEQEPLSGTTYQAGAPPAAAIVNKVLGSMNKPVYLLDITTLSQLRKDAHPSTYSGDHSGNDCSHWCLPGLPDTWNQLLYAA 749 KIMFVGDSLSLNMWES++CM+HASVPN+ T+FVR+ +S V FEDYGV + LYRTPYLVDI +E+VG VL L SIK G+AW GMD+LIFNSWHWWTHKG SQGWDYIRDGS L KDM+RL+A+ KGL TWA WVD N+D KTKV FQGISPTHY+G+EWNQP+KSC GE EPL+G+TY AG PPAA IVNKVL +M VYLLDIT LSQLRKDAHPS Y DH+GNDCSHWCLPGLPDTWN+LLYAA Sbjct: 120 KIMFVGDSLSLNMWESLSCMLHASVPNATTSFVRRQAISTVTFEDYGVIIQLYRTPYLVDIDREDVGRVLTLNSIKAGDAWTGMDMLIFNSWHWWTHKGDSQGWDYIRDGSNLVKDMDRLDAFFKGLTTWAGWVDQNIDLNKTKVLFQGISPTHYQGQEWNQPRKSCSGELEPLAGSTYPAGLPPAANIVNKVLKNMKNQVYLLDITLLSQLRKDAHPSVYGVDHTGNDCSHWCLPGLPDTWNELLYAA 368
BLAST of g.arboreum_cottongen_reftransV1_0006523 vs. ExPASy Swiss-Prot
Match: TBL8_ARATH (Protein trichome birefringence-like 8 OS=Arabidopsis thaliana GN=TBL8 PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 6.211e-46 Identity = 97/273 (35.53%), Postives = 142/273 (52.01%), Query Frame = -3 Query: 6 KIMFVGDSLSLNMWESMACMIHASVPNSKTTF-VRKSPLS------FVIFEDYGVTLYLYRTPYLVDI----------VKENVG-DVLNLGSIKGGNAWIGMDLLIFNSWHWWTHKGKSQGWDYIRDGSALYKDMNRLEAYNKGLATWANWVDTNVDQTKTKVFFQGISPTHYEGREWNQPKKSCYGEQEPLSGTTYQAGAPPAAAIVNKVLGSM---NKPVYLLDITTLSQLRKDAHPSTY----SGDHSGNDCSHWCLPGLPDTWNQLLYA 749 +I+FVGDS+ N WES+ CM+ +V N + V +P+S + F + +T+ +RTP+LV + VK V D N S K W+G D+L+FN+ HWW Y ++G L K M +E + K L TW +WV +D ++ VFF+ SP HY WN C + EP + P +++ + M + V L+IT L++ RKDAHPS Y + + + DCSHWCLPG+PDTWN++LYA Sbjct: 150 RIVFVGDSIGRNQWESLLCMLSQAVSNKSEIYEVNGNPISKHKGFLSMRFPEQNLTVEYHRTPFLVVVGRPPENSPVDVKMTVRVDEFNWQSKK----WVGSDVLVFNTGHWWNEDKTFIAGCYFQEGGKLNKTMGVMEGFEKSLKTWKSWVLERLDSERSHVFFRSFSPVHYRNGTWNL-GGLCDADTEPETDMKKMEPDPIHNNYISQAIQEMRYEHSKVKFLNITYLTEFRKDAHPSRYREPGTPEDAPQDCSHWCLPGVPDTWNEILYA 417
BLAST of g.arboreum_cottongen_reftransV1_0006523 vs. ExPASy Swiss-Prot
Match: TBL3_ARATH (Protein trichome birefringence-like 3 OS=Arabidopsis thaliana GN=TBL3 PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 6.778e-46 Identity = 87/272 (31.99%), Postives = 142/272 (52.21%), Query Frame = -3 Query: 6 KIMFVGDSLSLNMWESMACMIHASVPNSKTTFVRKSPLSFVIFEDYGVTLYLYRTPYLVD------IVKENVGDVLNLGSIKG-GNAWIGMDLLIFNSWHWWTHKGKSQG-WDYIRDGSALYKDMNRLEAYNKGLATWANWVDTNVDQTKTKVFFQGISPTHYEGREWNQPKKS-CYGEQEPLSGTTY--QAGAPPAAAIVNKVLGSMNKPVYLLDITTLSQLRKDAHPSTY--------SGDHSGN-----DCSHWCLPGLPDTWNQLLYA 749 +++FVGDSL + WES C++ + +P + + R ++Y T+ Y PY+V+ ++ + ++ + S+K W G D+L+FN++ WW + + W +G + + ++ AY GL TWANWVD+ VD KT+VFF +SPTH +W +P + C+ E +P+ + +V+ V+ M V +++IT LS+ R DAH S Y + + + DC HWCLPGLPDTWN++L A Sbjct: 161 RLLFVGDSLQRSQWESFVCLVESIIPEGEKSMKRSQKYFVFKAKEYNATIEFYWAPYIVESNTDIPVISDPKKRIVKVDSVKDRAKFWEGADILVFNTYVWWMSGLRMKALWGSFGNGESGAEALDTQVAYRLGLKTWANWVDSTVDPNKTRVFFTTMSPTHTRSADWGKPNGTKCFNETKPIKDKKFWGTGSNKQMMKVVSSVIKHMTTHVTVINITQLSEYRIDAHTSVYTETGGKILTAEQRADPMHHADCIHWCLPGLPDTWNRILLA 432
BLAST of g.arboreum_cottongen_reftransV1_0006523 vs. ExPASy Swiss-Prot
Match: TBL33_ARATH (Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 1.729e-44 Identity = 95/275 (34.55%), Postives = 142/275 (51.64%), Query Frame = -3 Query: 6 KIMFVGDSLSLNMWESMACMIHASVPNSKTTFVRKSPLSFVIFEDYGVTLYLYRTPYLVD------IVKENVGDVLNLGSI-KGGNAWIGMDLLIFNSWHWWTHKGKSQGWDYIRDGSALYKDMNRLE-----AYNKGLATWANWVDTNVDQTKTKVFFQGISPTHYEGREW-NQPKKSCYGEQEPLSGTTY--QAGAPPAAAIVNKVLGSMNKPVYLLDITTLSQLRKDAHPSTYSGD------------HSGNDCSHWCLPGLPDTWNQLLYA 749 ++M+VGDSL+ M+ SM C++H +P + + L+ ++Y T+ Y P+L++ IV V+ GSI K G W G+D++IFN++ WW K I GS K+ N +E AY G+ + WV N+D+ KT+VFF +SPTH +G +W +P ++CY + + +Y ++ +V G P+ LL+IT +S RKDAH S Y S DC HWCLPGL DTWN+LL+A Sbjct: 150 RMMYVGDSLNRGMFVSMICLLHRLIPEDQKSIKTNGSLTVFTAKEYNATIEFYWAPFLLESNSDDAIVHRISDRVVRKGSINKHGRHWKGVDIIIFNTYLWWMTGLKMN----ILQGSFDDKEKNIVEVSTEDAYRMGMKSMLRWVKNNMDRKKTRVFFTSMSPTHAKGIDWGGEPGQNCYNQTTLIEDPSYWGSDCRKSIMKVIGEVFGRSKTPITLLNITQMSNYRKDAHTSIYKKQWSPLTAEQLENPTSYADCVHWCLPGLQDTWNELLFA 420
BLAST of g.arboreum_cottongen_reftransV1_0006523 vs. ExPASy Swiss-Prot
Match: TBL10_ARATH (Protein trichome birefringence-like 10 OS=Arabidopsis thaliana GN=TBL10 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 3.553e-44 Identity = 94/274 (34.31%), Postives = 146/274 (53.28%), Query Frame = -3 Query: 6 KIMFVGDSLSLNMWESMACMIHASVPNSKTTF-VRKSPLS----FVIF--EDYGVTLYLYRTPYLVDIVKENVGD------VLNLGSIK-GGNAWIGMDLLIFNSWHWWTHKGKSQGWDYIRDGSALYKDMNRLEAYNKGLATWANWVDTNVDQTKTKVFFQGISPTHYEGREWNQPKKSCYGEQEPLSGTTYQAGAP-PAAAIVNKVLG-----SMNKPVYLLDITTLSQLRKDAHPSTYS-GDHS-----GNDCSHWCLPGLPDTWNQLLYA 749 +++FVGDS+ N WES+ C++ ++V N + + SP++ F++F E+Y T+ YR+P+LV + +G L L ++ + W D+L+ N+ HWW ++ Y ++G + MN +AY + L T W+ T +D KT+VFF+ +P H+ G +W + +C+ E P GT+ + I+ VL S V LL+IT ++ RKD HPS Y G H DCSHWCLPG+PDTWN+L YA Sbjct: 171 RLVFVGDSIGRNQWESLLCLLSSAVKNESLIYEINGSPITKHKGFLVFKFEEYNCTVEYYRSPFLVPQSRPPIGSPGKVKTSLKLDTMDWTSSKWRDADVLVLNTGHWWNEGKTTRTGCYFQEGEEVKLKMNVDDAYKRALNTVVKWIHTELDSNKTQVFFRTFAPVHFRGGDW-KTGGTCHMETLPEIGTSLASSETWEQLKILRDVLSHNSNRSETVKVKLLNITAMAAQRKDGHPSLYYLGPHGPAPLHRQDCSHWCLPGVPDTWNELFYA 443
BLAST of g.arboreum_cottongen_reftransV1_0006523 vs. ExPASy Swiss-Prot
Match: TBL32_ARATH (Protein trichome birefringence-like 32 OS=Arabidopsis thaliana GN=TBL32 PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.088e-43 Identity = 95/274 (34.67%), Postives = 143/274 (52.19%), Query Frame = -3 Query: 6 KIMFVGDSLSLNMWESMACMIHASVPNSKTTFVRKSPLSFVIFEDYGVTLYLYRTPYLVDIVKEN-----VGD-VLNLGSI-KGGNAWIGMDLLIFNSWHWWTHKGKSQGWD-YIRDGSALYKDMNRLEAYNKGLATWANWVDTNVDQTKTKVFFQGISPTHYEGREW-NQPKKSCYGEQEPLSGTTYQAGAPPAAAIVNKVLGS-----MNKPVYLLDITTLSQLRKDAHPSTY------------SGDHSGNDCSHWCLPGLPDTWNQLLYA 749 K+MFVGDSL+ M+ S+ C++H+ +P + + L+ +DY T+ Y P+L++ +N V D ++ GSI K G W G D+++FN++ WW K + + +D +M +AY L T WV N+D KT+VFF +SPTHY+G +W + K+CY + P+ + + + KV+G PV +L+IT LS RKDAH S Y + S +DC HWCLPGL DTWN+L +A Sbjct: 175 KMMFVGDSLNRGMYVSLICLLHSQIPENSKSMDTFGSLTVFSLKDYNATIEFYWAPFLLESNSDNATVHRVSDRIVRKGSINKHGRHWRGADIVVFNTYLWWRTGFKMKILEGSFKDEKKRIVEMESEDAYRMALKTMVKWVKKNMDPLKTRVFFATMSPTHYKGEDWGGEQGKNCYNQTTPIQDMNHWPSD--CSKTLMKVIGEELDQRAEFPVTVLNITQLSGYRKDAHTSIYKKQWSPLTKEQLANPASYSDCIHWCLPGLQDTWNELFFA 446 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006523 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0006523 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006523 ID=g.arboreum_cottongen_reftransV1_0006523; Name=g.arboreum_cottongen_reftransV1_0006523; organism=Gossypium arboreum; type=contig; length=751bpback to top |