Peer-reviewed papers citing CottonGen in 2016 (39) with links to publications.
- Balasubramanian, V. K., Rai, K. M., Thu, S. W., Hii, M. M., & Mendu, V. (2016). Genome-wide identification of multifunctional laccase gene family in cotton (Gossypium spp.); expression and biochemical analysis during fiber development. Scientific Reports, 6(1), 34309.
Cited By - Shang, L., Wang, Y., Cai, S., Wang, X., Li, Y., Abduweli, A., & Hua, J. (2016). Partial dominance, overdominance, epistasis and QTL by environment interactions contribute to heterosis in two upland cotton hybrids. G3: Genes, Genomes, Genetics, 6(3), 499-507.
Cited By - Shang, L., Wang, Y., Wang, X., Liu, F., Abduweli, A., Cai, S., ... & Hua, J. (2016). Genetic analysis and QTL detection on fiber traits using two recombinant inbred lines and their backcross populations in upland cotton. G3: Genes, Genomes, Genetics, 6(9), 2717-2724.
Cited By - Page, J. T., Liechty, Z. S., Alexander, R. H., Clemons, K., Hulse-Kemp, A. M., Ashrafi, H., ... & Udall, J. A. (2016). DNA sequence evolution and rare homoeologous conversion in tetraploid cotton. PLoS Genetics, 12(5), e1006012.
Cited By - Ma, Q., Wu, M., Pei, W., Wang, X., Zhai, H., Wang, W., ... & Yu, S. (2016). RNA-seq-mediated transcriptome analysis of a fiberless mutant cotton and its possible origin based on SNP markers. PloS one, 11(3), e0151994.
Cited By - Singh, A. K., Paritosh, K., Kant, U., Burma, P. K., & Pental, D. (2016). High expression of Cry1Ac protein in cotton (Gossypium hirsutum) by combining independent transgenic events that target the protein to cytoplasm and plastids. PLoS One, 11(7), e0158603.
Cited By - Man, W., Zhang, L., Li, X., Xie, X., Pei, W., Yu, J., ... & Zhang, J. (2016). A comparative transcriptome analysis of two sets of backcross inbred lines differing in lint-yield derived from a Gossypium hirsutum× Gossypium barbadense population. Molecular Genetics and Genomics, 291, 1749-1767.
Cited By - Shang, L., Cai, S., Ma, L., Wang, Y., Abduweli, A., Wang, M., ... & Hua, J. (2016). Seedling root QTLs analysis on dynamic development and upon nitrogen deficiency stress in Upland cotton. Euphytica, 207, 645-663.
Cited By - Dai, B., Guo, H., Huang, C., Zhang, X., & Lin, Z. (2016). Genomic heterozygosity and hybrid breakdown in cotton (Gossypium): different traits, different effects. BMC genetics, 17, 1-11.
Cited By - Wang, X., Ma, Q., Dou, L., Liu, Z., Peng, R., & Yu, S. (2016). Genome-wide characterization and comparative analysis of the MLO gene family in cotton. Plant Physiology and Biochemistry, 103, 106-119.
Cited By - Jung, S., Lee, T., Ficklin, S., Yu, J., Cheng, C. H., & Main, D. (2016). Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. Database, 2016, baw010.
Cited By - Su, J., Fan, S., Li, L., Wei, H., Wang, C., Wang, H., ... & Yu, S. (2016). Detection of favorable QTL alleles and candidate genes for lint percentage by GWAS in Chinese upland cotton. Frontiers in plant science, 7, 1576.
Cited By - Islam, M. S., Zeng, L., Thyssen, G. N., Delhom, C. D., Kim, H. J., Li, P., & Fang, D. D. (2016). Mapping by sequencing in cotton (Gossypium hirsutum) line MD52ne identified candidate genes for fiber strength and its related quality attributes. Theoretical and Applied Genetics, 129, 1071-1086.
Cited By - DOU, L. L., GUO, Y. N., Ondati, E., PANG, C. Y., WEI, H. L., SONG, M. Z., ... & YU, S. X. (2016). Identification and expression analysis of group III WRKY transcription factors in cotton. Journal of Integrative Agriculture, 15(11), 2469-2480.
Cited By - Wang, B., Liu, L., Zhang, D., Zhuang, Z., Guo, H., Qiao, X., ... & Chee, P. W. (2016). A genetic map between Gossypium hirsutum and the Brazilian endemic G. mustelinum and its application to QTL mapping. G3: Genes, Genomes, Genetics, 6(6), 1673-1685.
Cited By - Jamshed, M., Jia, F., Gong, J., Palanga, K. K., Shi, Y., Li, J., ... & Yuan, Y. (2016). Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population. BMC genomics, 17, 1-13.
Cited By - Tang, K., Dong, C. J., & Liu, J. Y. (2016). Genome-wide comparative analysis of the phospholipase D gene families among allotetraploid cotton and its diploid progenitors. PloS one, 11(5), e0156281.
Cited By - Su, J., Li, L., Pang, C., Wei, H., Wang, C., Song, M., ... & Yu, S. (2016). Two genomic regions associated with fiber quality traits in Chinese upland cotton under apparent breeding selection. Scientific reports, 6(1), 38496.
Cited By - Li, X., Jin, X., Wang, H., Zhang, X., & Lin, Z. (2016). Structure, evolution, and comparative genomics of tetraploid cotton based on a high-density genetic linkage map. DNA Research, 23(3), 283-293.
Cited By - Imran, M., Tang, K., & Liu, J. Y. (2016). Comparative genome-wide analysis of the malate dehydrogenase gene families in cotton. PLoS One, 11(11), e0166341.
Cited By - Hugie, K. L., Fang, D. D., Smith, C. W., Li, P., Hinze, L. L., Hague, S. S., & Jones, D. C. (2016). Utility assessment of published microsatellite markers for fiber length and bundle strength QTL in a cotton breeding program. Crop Science, 56(6), 2983-2995.
Cited By - Pauli, D., Andrade-Sanchez, P., Carmo-Silva, A. E., Gazave, E., French, A. N., Heun, J., ... & Gore, M. A. (2016). Field-based high-throughput plant phenotyping reveals the temporal patterns of quantitative trait loci associated with stress-responsive traits in cotton. G3: Genes, Genomes, Genetics, 6(4), 865-879.
Cited By - Jia, X., Pang, C., Wei, H., Wang, H., Ma, Q., Yang, J., ... & Yu, S. (2016). High-density linkage map construction and QTL analysis for earliness-related traits in Gossypium hirsutum L. BMC genomics, 17(1), 1-14.
Cited By - Du, L., Cai, C., Wu, S., Zhang, F., Hou, S., & Guo, W. (2016). Evaluation and exploration of favorable QTL alleles for salt stress related traits in cotton cultivars (G. hirsutum L.). PLoS One, 11(3), e0151076.
Cited By - Kumar, P., He, Y., Singh, R., Davis, R. F., Guo, H., Paterson, A. H., ... & Chee, P. W. (2016). Fine mapping and identification of candidate genes for a QTL affecting Meloidogyne incognita reproduction in Upland cotton. BMC genomics, 17, 1-12.
Cited By - Hinze, L. L., Gazave, E., Gore, M. A., Fang, D. D., Scheffler, B. E., Yu, J. Z., ... & Percy, R. G. (2016). Genetic diversity of the two commercial tetraploid cotton species in the Gossypium diversity reference set. Journal of Heredity, 107(3), 274-286.
Cited By - Dong, C. J., Wu, A. M., Du, S. J., Tang, K., Wang, Y., & Liu, J. Y. (2016). GhMCS1, the cotton orthologue of human GRIM-19, Is a subunit of mitochondrial complex I and associated with cotton fibre growth. Plos one, 11(9), e0162928.
Cited By - Wang, W., Xia, M., Chen, J., Deng, F., Yuan, R., Zhang, X., & Shen, F. (2016). Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum. Data in brief, 9, 345-348.
Cited By - Guo, X. H., Cai, C. P., Yuan, D. D., Zhang, R. S., Xi, J. L., & Guo, W. Z. (2016). Development and identification of Verticillium wilt-resistant upland cotton accessions by pyramiding QTL related to resistance. Journal of Integrative Agriculture, 15(3), 512-520.
Cited By - Khatun, K., Robin, A. H. K., Park, J. I., Kim, C. K., Lim, K. B., Kim, M. B., ... & Chung, M. Y. (2016). Genome-wide identification, characterization and expression profiling of ADF family genes in Solanum lycopersicum L. Genes, 7(10), 79.
Cited By - Zhang, F., Jin, X., Wang, L., Li, S., Wu, S., Cheng, C., ... & Guo, W. (2016). A cotton annexin affects fiber elongation and secondary cell wall biosynthesis associated with Ca2+ influx, ROS homeostasis, and actin filament reorganization. Plant physiology, 171(3), 1750-1770.
Cited By - Ulloa, M., Wang, C., Saha, S., Hutmacher, R. B., Stelly, D. M., Jenkins, J. N., ... & Roberts, P. A. (2016). Analysis of root-knot nematode and fusarium wilt disease resistance in cotton (Gossypium spp.) using chromosome substitution lines from two alien species. Genetica, 144, 167-179.
Cited By - Percy, R. G. (2016). Genetic Diversity of the Two Commercial Tetraploid Cotton Species in the Gossypium Diversity ReferenceáSet. Journal of Heredity, 274, 286.
- You, Q., Zhang, L., Yi, X., Zhang, K., Yao, D., Zhang, X., ... & Su, Z. (2016). Co-expression network analyses identify functional modules associated with development and stress response in Gossypium arboreum. Scientific reports, 6(1), 38436.
Cited By - Zhou, B., Zhang, L., Ullah, A., Jin, X., Yang, X., & Zhang, X. (2016). Identification of multiple stress responsive genes by sequencing a normalized cDNA library from sea-land cotton (Gossypium barbadense L.). PLoS One, 11(3), e0152927.
Cited By - Wang, W., Xia, M., Chen, J., Deng, F., Yuan, R., Zhang, X., & Shen, F. (2016). Genome-wide analysis of superoxide dismutase gene family in Gossypium raimondii and G. arboreum. Plant Gene, 6, 18-29.
Cited By - Salih, H., Leng, X., He, S. P., Jia, Y. H., Gong, W. F., & Du, X. M. (2016). Characterization of the early fiber development gene, Ligon-lintless 1 (Li1), using microarray. Plant Gene, 6, 59-66.
Cited By - Peng, Z., He, S., Gong, W., Sun, J., Pan, Z., Sun, G., ... & Lu, Y. (2016). Identification of candidate thermotolerance genes during early seedling stage in upland cotton (Gossypium hirsutum L.) revealed by comparative transcriptome analysis. Acta Physiologiae Plantarum, 38, 1-16.
- Kumar, S., Kanakachari, M., Gurusamy, D., Kumar, K., Narayanasamy, P., Kethireddy Venkata, P., ... & Reddy, V. S. (2016). Genome‐wide transcriptomic and proteomic analyses of bollworm‐infested developing cotton bolls revealed the genes and pathways involved in the insect pest defence mechanism. Plant Biotechnology Journal, 14(6), 1438-1455.
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