Peer-reviewed papers citing CottonGen in 2018 (84) with links to publications.
- Jung, J., Maeda, M., Chang, A., Landivar, J., Yeom, J., & McGinty, J. (2018). Unmanned aerial system assisted framework for the selection of high yielding cotton genotypes. Computers and Electronics in Agriculture, 152, 74-81.
Cited By - Wang, M., Wang, P., Liang, F., Ye, Z., Li, J., Shen, C., ... & Zhang, X. (2018). A global survey of alternative splicing in allopolyploid cotton: landscape, complexity and regulation. New Phytologist, 217(1), 163-178.
Cited By - Yang, Z., Gong, Q., Wang, L., Jin, Y., Xi, J., Li, Z., ... & Li, F. (2018). Genome-wide study of YABBY genes in upland cotton and their expression patterns under different stresses. Frontiers in Genetics, 9, 33.
Cited By - Wang, L., Yang, Z., Zhang, B., Yu, D., Liu, J., Gong, Q., ... & Li, F. (2018). Genome-wide characterization and phylogenetic analysis of GSK gene family in three species of cotton: evidence for a role of some GSKs in fiber development and responses to stress. BMC plant biology, 18, 1-21.
Cited By - Sun, H., Hao, P., Ma, Q., Zhang, M., Qin, Y., Wei, H., ... & Yu, S. (2018). Genome-wide identification and expression analyses of the pectate lyase (PEL) gene family in cotton (Gossypium hirsutum L.). BMC genomics, 19, 1-14.
Cited By - ZHAO, L., YAO, J., CHEN, W., LI, Y., LÜ, Y., GUO, Y., ... & ZHANG, Y. (2018). A genome-wide analysis of SWEET gene family in cotton and their expressions under different stresses. Journal of Cotton Research, 1, 1-15.
Cited By - Abdullah, M., Cheng, X., Cao, Y., Su, X., Manzoor, M. A., Gao, J., ... & Lin, Y. (2018). Zinc finger-homeodomain transcriptional factors (ZHDs) in upland cotton (Gossypium hirsutum): Genome-wide identification and expression analysis in fiber development. Frontiers in Genetics, 9, 357.
Cited By - Chen, Y., Liu, G., Ma, H., Song, Z., Zhang, C., Zhang, J., ... & Zhang, J. (2018). Identification of introgressed alleles conferring high fiber quality derived from Gossypium barbadense L. in secondary mapping populations of G. hirsutum L. Frontiers in Plant Science, 9, 1023.
Cited By - Song, C., Li, W., Wang, Z., Pei, X., Liu, Y., Ren, Z., ... & Yang, D. (2018). Genome resequencing reveals genetic variation between the parents of an elite hybrid upland cotton. Agronomy, 8(12), 305.
Cited By - Zhao, Y., Huang, Y., Wang, Y., Cui, Y., Liu, Z., & Hua, J. (2018). RNA interference of GhPEPC2 enhanced seed oil accumulation and salt tolerance in Upland cotton. Plant Science, 271, 52-61.
Cited By - Yuan, N., Rai, K. M., Balasubramanian, V. K., Upadhyay, S. K., Luo, H., & Mendu, V. (2018). Genome-wide identification and characterization of LRR-RLKs reveal functional conservation of the SIF subfamily in cotton (Gossypium hirsutum). BMC plant biology, 18(1), 1-17.
Cited By - Zhu, S. H., Xue, F., Li, Y. J., Liu, F., Zhang, X. Y., Zhao, L. J., ... & Sun, J. (2018). Identification and functional characterization of a microtubule-associated protein, GhCLASP2, from upland cotton (Gossypium hirsutum L.). Frontiers in Plant Science, 9, 882.
Cited By - Qin, W., Yu, Y., Jin, Y., Wang, X., Liu, J., Xi, J., ... & Yang, Z. (2018). Genome-wide analysis elucidates the role of CONSTANS-like genes in stress responses of cotton. International journal of molecular sciences, 19(9), 2658.
Cited By - Ditta, A., Zhou, Z., Cai, X., Shehzad, M., Wang, X., Okubazghi, K. W., ... & Liu, F. (2018). Genome-wide mining and characterization of SSR markers for gene mapping and gene diversity in Gossypium barbadense L. and Gossypium darwinii G. watt accessions. Agronomy, 8(9), 181.
Cited By - Hsu, C. Y., Arick II, M. A., Miao, Q., Saha, S., Jenkins, J. N., Ayubov, M. S., ... & Ma, D. P. (2018). Transcriptome analysis of ten days post Anthesis elongating Fiber in the upland cotton (Gossypium hirsutum) chromosome substitution line CS-B25. American Journal of Plant Sciences, 9(6), 1334-1361.
Cited By - McCarty Jr, J. C., Deng, D. D., Jenkins, J. N., & Geng, L. (2018). Genetic diversity of day-neutral converted landrace Gossypium hirsutum L. accessions. Euphytica, 214(10), 173.
Cited By - Abdelraheem, A., Fang, D. D., & Zhang, J. (2018). Quantitative trait locus mapping of drought and salt tolerance in an introgressed recombinant inbred line population of Upland cotton under the greenhouse and field conditions. Euphytica, 214, 1-20.
Cited By - Shim, J., Mangat, P. K., & Angeles-Shim, R. B. (2018). Natural variation in wild Gossypium species as a tool to broaden the genetic base of cultivated cotton. J. Plant Sci. Curr. Res, 2(005).
Cited By - ANDÉRICA, E. P., MONTERO, F. R., GARCÍA, M. L., & LIGERO, J. G. (2018). Genetic diversity and phylogenetic relationships of a potential cotton collection for European breeding research. Turkish Journal of Botany, 42(2), 172-182.
Cited By - Xiao, G., He, P., Zhao, P., Liu, H., Zhang, L., Pang, C., & Yu, J. (2018). Genome-wide identification of the GhARF gene family reveals that GhARF2 and GhARF18 are involved in cotton fibre cell initiation. Journal of experimental botany, 69(18), 4323-4337.
Cited By - Wen, T., Wu, M., Shen, C., Gao, B., Zhu, D., Zhang, X., ... & Lin, Z. (2018). Linkage and association mapping reveals the genetic basis of brown fibre (Gossypium hirsutum). Plant Biotechnology Journal, 16(9), 1654-1666.
Cited By - Zhang, B., Chen, X., Lu, X., Shu, N., Wang, X., Yang, X., ... & Ye, W. (2018). Transcriptome analysis of Gossypium hirsutum L. reveals different mechanisms among NaCl, NaOH and Na2CO3 stress tolerance. Scientific reports, 8(1), 13527.
Cited By - Li, W., Ren, Z., Wang, Z., Sun, K., Pei, X., Liu, Y., ... & Yang, D. (2018). Evolution and stress responses of Gossypium hirsutum SWEET genes. International Journal of Molecular Sciences, 19(3), 769.
Cited By - Salih, H., Gong, W., Mkulama, M., & Du, X. (2018). Genome-wide characterization, identification, and expression analysis of the WD40 protein family in cotton. Genome, 61(7), 539-547.
Cited By - Ashraf, J., Zuo, D., Wang, Q., Malik, W., Zhang, Y., Abid, M. A., ... & Song, G. (2018). Recent insights into cotton functional genomics: progress and future perspectives. Plant biotechnology journal, 16(3), 699-713.
Cited By - Mao, G., Ma, Q., Wei, H., Su, J., Wang, H., Ma, Q., ... & Yu, S. (2018). Fine mapping and candidate gene analysis of the virescent gene v 1 in Upland cotton (Gossypium hirsutum). Molecular genetics and genomics, 293, 249-264.
Cited By - Deng, F., Zhang, X., Wang, W., Yuan, R., & Shen, F. (2018). Identification of Gossypium hirsutum long non-coding RNAs (lncRNAs) under salt stress. BMC plant biology, 18, 1-14.
Cited By - Li, W., Sun, K., Ren, Z., Song, C., Pei, X., Liu, Y., ... & Yang, D. (2018). Molecular evolution and stress and phytohormone responsiveness of SUT genes in Gossypium hirsutum. Frontiers in Genetics, 9, 494.
Cited By - Peng, Z., He, S., Gong, W., Xu, F., Pan, Z., Jia, Y., ... & Du, X. (2018). Integration of proteomic and transcriptomic profiles reveals multiple levels of genetic regulation of salt tolerance in cotton. BMC plant biology, 18(1), 1-19.
Cited By - Zang, X., Pei, W., Wu, M., Geng, Y., Wang, N., Liu, G., ... & Yu, J. (2018). Genome-scale analysis of the WRI-like family in Gossypium and functional characterization of GhWRI1a controlling triacylglycerol content. Frontiers in Plant Science, 9, 1516.
Cited By - Wang, L., Xing, H., Yuan, Y., Wang, X., Saeed, M., Tao, J., ... & Sun, X. (2018). Genome-wide analysis of codon usage bias in four sequenced cotton species. PloS one, 13(3), e0194372.
Cited By - Keerio, A. A., Shen, C., Nie, Y., Ahmed, M. M., Zhang, X., & Lin, Z. (2018). QTL mapping for fiber quality and yield traits based on introgression lines derived from Gossypium hirsutum× G. tomentosum. International journal of molecular sciences, 19(1), 243.
Cited By - Zhao, Y., Wang, Y., Huang, Y., Cui, Y., & Hua, J. (2018). Gene network of oil accumulation reveals expression profiles in developing embryos and fatty acid composition in Upland cotton. Journal of plant physiology, 228, 101-112.
Cited By - Xiao, Y., Chen, Y., Ding, Y., Wu, J., Wang, P., Yu, Y., ... & Ge, X. (2018). Effects of GhWUS from upland cotton (Gossypium hirsutum L.) on somatic embryogenesis and shoot regeneration. Plant Science, 270, 157-165.
Cited By - Liu, R., Gong, J., Xiao, X., Zhang, Z., Li, J., Liu, A., ... & Yuan, Y. (2018). GWAS analysis and QTL identification of fiber quality traits and yield components in upland cotton using enriched high-density SNP markers. Frontiers in Plant Science, 9, 1067.
Cited By - Xia, X. C., Hu, Q. Q., Li, W., Chen, Y., Han, L. H., Tao, M., ... & Huang, G. Q. (2018). Cotton (Gossypium hirsutum) JAZ3 and SLR1 function in jasmonate and gibberellin mediated epidermal cell differentiation and elongation. Plant Cell, Tissue and Organ Culture (PCTOC), 133, 249-262.
Cited By - Liu, Z., Liu, Y., Liu, F., Zhang, S., Wang, X., Lu, Q., ... & Peng, R. (2018). Genome-wide survey and comparative analysis of long terminal repeat (LTR) retrotransposon families in four gossypium species. Scientific Reports, 8(1), 9399.
Cited By - Zheng, K., Ni, Z., Qu, Y., Cai, Y., Yang, Z., Sun, G., & Chen, Q. (2018). Genome-wide identification and expression analyses of TCP transcription factor genes in Gossypium barbadense. Scientific reports, 8(1), 14526.
Cited By - Lu, R., Zhang, J., Liu, D., Wei, Y. L., Wang, Y., & Li, X. B. (2018). Characterization of bHLH/HLH genes that are involved in brassinosteroid (BR) signaling in fiber development of cotton (Gossypium hirsutum). BMC plant biology, 18(1), 1-13.
Cited By - Ullah, A., Sun, H., Hakim, Yang, X., & Zhang, X. (2018). A novel cotton WRKY gene, GhWRKY6‐like, improves salt tolerance by activating the ABA signaling pathway and scavenging of reactive oxygen species. Physiologia Plantarum, 162(4), 439-454.
Cited By - Jia, Y., Pan, Z., He, S., Gong, W., Geng, X., Pang, B., ... & Du, X. (2018). Genetic diversity and population structure of Gossypium arboreum L. collected in China. Journal of Cotton Research, 1(1), 1-8.
Cited By - Wang, C., Ulloa, M., Duong, T., & Roberts, P. A. (2018). Quantitative trait loci mapping of multiple independent loci for resistance to Fusarium oxysporum f. sp. vasinfectum races 1 and 4 in an interspecific cotton population. Phytopathology, 108(6), 759-767.
Cited By - Hu, H., Zhang, R., Dong, S., Li, Y., Fan, C., Wang, Y., ... & Peng, L. (2018). AtCSLD3 and GhCSLD3 mediate root growth and cell elongation downstream of the ethylene response pathway in Arabidopsis. Journal of Experimental Botany, 69(5), 1065-1080.
Cited By - Chen, Y., Chen, Y., Feng, S., Zhao, T., & Zhou, B. (2018). Overcoming obstacles to interspecific hybridization between Gossypium hirsutum and G. turneri. Euphytica, 214, 1-15.
Cited By - Mushtaq, R., Shahzad, K., Mansoor, S., Shah, Z. H., Alsamadany, H., Mujtaba, T., ... & Bashir, A. (2018). Exploration of cotton leaf curl virus resistance genes and their screening in Gossypium arboreum by targeting resistance gene analogues. AoB Plants, 10(6), ply067.
Cited By - Prewitt, S. F., Ayre, B. G., & McGarry, R. C. (2018). Cotton CENTRORADIALIS/TERMINAL FLOWER 1/SELF-PRUNING genes functionally diverged to differentially impact plant architecture. Journal of experimental botany, 69(22), 5403-5417.
Cited By - Huang, C., Shen, C., Wen, T., Gao, B., Zhu, D., Li, X., ... & Lin, Z. (2018). SSR-based association mapping of fiber quality in upland cotton using an eight-way MAGIC population. Molecular Genetics and Genomics, 293, 793-805.
Cited By - Sable, A., Rai, K. M., Choudhary, A., Yadav, V. K., Agarwal, S. K., & Sawant, S. V. (2018). Inhibition of heat shock proteins HSP90 and HSP70 induce oxidative stress, suppressing cotton fiber development. Scientific Reports, 8(1), 3620.
Cited By - Tao, C., Jin, X., Zhu, L., Xie, Q., Wang, X., & Li, H. (2018). Genome-wide investigation and expression profiling of APX gene family in Gossypium hirsutum provide new insights in redox homeostasis maintenance during different fiber development stages. Molecular Genetics and Genomics, 293, 685-697.
Cited By - Chen, Y., Yang, Z., Xiao, Y., Wang, P., Wang, Y., Ge, X., ... & Li, F. (2018). Genome-wide analysis of the NF-YB gene family in Gossypium hirsutum L. and characterization of the role of GhDNF-YB22 in embryogenesis. International journal of molecular sciences, 19(2), 483.
Cited By - Zhu, S., Yu, X., Li, Y., Sun, Y., Zhu, Q., & Sun, J. (2018). Highly efficient targeted gene editing in upland cotton using the CRISPR/Cas9 system. International journal of molecular sciences, 19(10), 3000.
Cited By - Yang, Y., Chen, T., Ling, X., & Ma, Z. (2018). Gbvdr6, a gene encoding a receptor-like protein of cotton (Gossypium barbadense), confers resistance to Verticillium wilt in Arabidopsis and upland cotton. Frontiers in plant science, 8, 2272.
Cited By - Ma, L. L., Ijaz, B., Wang, Y. M., & Hua, J. P. (2018). Dynamic QTL analysis and validation for plant height using maternal and paternal backcrossing populations in Upland cotton. Euphytica, 214, 1-17.
Cited By - Sarfraz, Z., Iqbal, M. S., Pan, Z., Jia, Y., He, S., Wang, Q., ... & Du, X. (2018). Integration of conventional and advanced molecular tools to track footprints of heterosis in cotton. BMC genomics, 19(1), 1-19.
Cited By - Lu, H., Cui, X., Liu, Z., Liu, Y., Wang, X., Zhou, Z., ... & Wang, K. (2018). Discovery and annotation of a novel transposable element family in Gossypium. BMC plant biology, 18, 1-10.
Cited By - Chandnani, R., Kim, C., Guo, H., Shehzad, T., Wallace, J. G., He, D., ... & Paterson, A. H. (2018). Genetic analysis of gossypium fiber quality traits in reciprocal advanced backcross populations. The plant genome, 11(1), 170057.
Cited By - Yuan, Y., Wang, X., Wang, L., Xing, H., Wang, Q., Saeed, M., ... & Sun, X. Z. (2018). Genome-wide association study identifies candidate genes related to seed oil composition and protein content in Gossypium hirsutum L. Frontiers in Plant Science, 9, 1359.
Cited By - ZHANG, B., ZHANG, X., GUO, L., QI, T., WANG, H., TANG, H., ... & WU, J. (2018). Genome-wide analysis of Rf-PPR-like (RFL) genes and a new InDel marker development for Rf1 gene in cytoplasmic male sterile CMS-D2 Upland cotton. Journal of Cotton Research, 1, 1-11.
Cited By - Zhang, B., Zhang, X., Liu, G., Guo, L., Qi, T., Zhang, M., ... & Wu, J. (2018). A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm. BMC plant biology, 18, 1-17.
Cited By - Chen, X., Zhang, M., Wang, M., Tan, G., Zhang, M., Hou, Y. X., ... & Li, Z. (2018). The effects of mepiquat chloride on the lateral root initiation of cotton seedlings are associated with auxin and auxin-conjugate homeostasis. BMC plant biology, 18(1), 1-14.
Cited By - Gu, L., Li, L., Wei, H., Wang, H., Su, J., Guo, Y., & Yu, S. (2018). Identification of the group IIa WRKY subfamily and the functional analysis of GhWRKY17 in upland cotton (Gossypium hirsutum L.). PloS one, 13(1), e0191681.
Cited By - Meng, C., Yan, Y., Liu, Z., Chen, L., Zhang, Y., Li, X., ... & Ma, Z. (2018). Systematic analysis of cotton non-specific lipid transfer protein family revealed a special group that is involved in fiber elongation. Frontiers in Plant Science, 9, 1285.
Cited By - Nardeli, S. M., Artico, S., Aoyagi, G. M., de Moura, S. M., da Franca Silva, T., Grossi-de-Sa, M. F., ... & Alves-Ferreira, M. (2018). Genome-wide analysis of the MADS-box gene family in polyploid cotton (Gossypium hirsutum) and in its diploid parental species (Gossypium arboreum and Gossypium raimondii). Plant Physiology and Biochemistry, 127, 169-184.
Cited By - Yin, Z., Li, Y., Zhu, W., Fu, X., Han, X., Wang, J., ... & Ye, W. (2018). Identification, characterization, and expression patterns of tcp genes and microrna319 in cotton. International Journal of Molecular Sciences, 19(11), 3655.
Cited By - Shi, J., Zhang, M., Zhai, W., Meng, J., Gao, H., Zhang, W., ... & Qi, F. (2018). Genome-wide analysis of nucleotide binding site-leucine-rich repeats (NBS-LRR) disease resistance genes in Gossypium hirsutum. Physiological and Molecular Plant Pathology, 104, 1-8.
Cited By - Zou, X., Zhen, Z., Ge, Q., Fan, S., Liu, A., Gong, W., ... & Yuan, Y. (2018). Genome-wide identification and analysis of the evolution and expression patterns of the cellulose synthase gene superfamily in Gossypium species. Gene, 646, 28-38.
Cited By - Li, T. G., Zhang, D. D., Zhou, L., Kong, Z. Q., Hussaini, A. S., Wang, D., ... & Dai, X. F. (2018). Genome-wide identification and functional analyses of the CRK gene family in cotton reveals GbCRK18 confers verticillium wilt resistance in Gossypium barbadense. Frontiers in plant science, 9, 1266.
Cited By - Baytar, A. A., Peynircioğlu, C., Sezener, V., Basal, H., Frary, A., Frary, A., & Doğanlar, S. (2018). Genome-wide association mapping of yield components and drought tolerance-related traits in cotton. Molecular Breeding, 38, 1-16.
Cited By - Ma, Z., He, S., Wang, X., Sun, J., Zhang, Y., Zhang, G., ... & Du, X. (2018). Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield. Nature genetics, 50(6), 803-813.
Cited By - Zhang, B., Liu, J., Yang, Z. E., Chen, E. Y., Zhang, C. J., Zhang, X. Y., & Li, F. G. (2018). Genome-wide analysis of GRAS transcription factor gene family in Gossypium hirsutum L. BMC genomics, 19, 1-12.
Cited By - Yu, D., Qanmber, G., Lu, L., Wang, L., Li, J., Yang, Z., ... & Yang, Z. (2018). Genome-wide analysis of cotton GH3 subfamily II reveals functional divergence in fiber development, hormone response and plant architecture. BMC plant biology, 18(1), 1-18.
Cited By - Zhang, J., Huang, G. Q., Zou, D., Yan, J. Q., Li, Y., Hu, S., & Li, X. B. (2018). The cotton (Gossypium hirsutum) NAC transcription factor (FSN1) as a positive regulator participates in controlling secondary cell wall biosynthesis and modification of fibers. New Phytologist, 217(2), 625-640.
Cited By - Gu, L., Wang, H., Wei, H., Sun, H., Li, L., Chen, P., ... & Yu, S. (2018). Identification, expression, and functional analysis of the group IId WRKY subfamily in upland cotton (Gossypium hirsutum L.). Frontiers in Plant Science, 9, 1684.
Cited By - Zhao, J., Liu, J., Xu, J., Zhao, L., Wu, Q., & Xiao, S. (2018). Quantitative trait locus mapping and candidate gene analysis for Verticillium wilt resistance using Gossypium barbadense chromosomal segment introgressed line. Frontiers in Plant Science, 9, 682.
Cited By - Zhao, Y., Liu, Z., Wang, X., Wang, Y., & Hua, J. (2018). Molecular characterization and expression analysis of GhWRI1 in upland cotton. Journal of Plant Biology, 61, 186-197.
Cited By - Zhang, Z., Ge, X., Luo, X., Wang, P., Fan, Q., Hu, G., ... & Wu, J. (2018). Simultaneous editing of two copies of Gh14-3-3d confers enhanced transgene-clean plant defense against Verticillium dahliae in allotetraploid upland cotton. Frontiers in plant science, 9, 842.
Cited By - Yan, Q., Wang, Y., Li, Q., Zhang, Z., Ding, H., Zhang, Y., ... & Xiao, Y. (2018). Up‐regulation of Gh TT 2‐3A in cotton fibres during secondary wall thickening results in brown fibres with improved quality. Plant Biotechnology Journal, 16(10), 1735-1747.
Cited By - Shaban, M., Ahmed, M. M., Sun, H., Ullah, A., & Zhu, L. (2018). Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses. BMC genomics, 19, 1-13.
Cited By - Yang, J., Zhang, Y., Wang, X., Wang, W., Li, Z., Wu, J., ... & Ma, Z. (2018). HyPRP1 performs a role in negatively regulating cotton resistance to V. dahliae via the thickening of cell walls and ROS accumulation. BMC plant biology, 18(1), 1-18.
Cited By - Wamiq, G., & Khan, J. A. (2018). Overexpression of ghr-miR166b generates resistance against Bemisia tabaci infestation in Gossypium hirsutum plants. Planta, 247, 1175-1189.
Cited By - Liu, W., Zhang, Z., Li, W., Zhu, W., Ren, Z., Wang, Z., ... & Ma, Z. (2018). Genome-wide identification and comparative analysis of the 3-hydroxy-3-methylglutaryl coenzyme A reductase (HMGR) gene family in Gossypium. Molecules, 23(2), 193.
Cited By - Khokhar, E. S., Shakeel, A., Maqbool, M. A., Abuzar, M. K., Zareen, S., Syeda, S. A., & Asadullah, M. (2018). Studying combining ability and heterosis in different cotton (Gossypium hirsutum L.) genotypes for yield and yield contributing traits. Pakistan Journal of Agricultural Research, 31(1).
Cited By - Backes, A., Behr, M., Xu, X., Gatti, E., Legay, S., Predieri, S., ... & Guerriero, G. (2018). Sucrose synthase gene expression analysis in the fibre nettle (Urtica dioica L.) cultivar “clone 13”. Industrial crops and products, 123, 315-322.
Cited By - Han, Y. J., Zhong, Z. H., Song, L. L., Stefan, O., Wang, Z. H., & Lu, G. D. (2018). Evolutionary analysis of plant jacalin-related lectins (JRLs) family and expression of rice JRLs in response to Magnaporthe oryzae. Journal of Integrative Agriculture, 17(6), 1252-1266.
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