Peer-reviewed papers/books citing CottonGen in 2021 (142) with links to publications.
- Yu, J., Jung, S., Cheng, C. H., Lee, T., Zheng, P., Buble, K., ... & Main, D. (2021). CottonGen: The community database for cotton genomics, genetics, and breeding research. Plants, 10(12), 2805.
Cited By - Zhang, A., Wei, Y., Shi, Y., Deng, X., Gao, J., Feng, Y., ... & Zhang, W. (2021). Profiling of H3K4me3 and H3K27me3 and their roles in gene subfunctionalization in allotetraploid cotton. Frontiers in Plant Science, 12, 761059.
Cited By - Khanale, V., Bhattacharya, A., Satpute, R., & Char, B. (2021). Brief bioinformatics identification of cotton bZIP transcription factors family from Gossypium hirsutum, Gossypium arboreum and Gossypium raimondii. Plant Biotechnology Reports, 15, 493-511.
Cited By - Zhang, X., Zhao, J., Wu, X., Hu, G., Fan, S., & Ma, Q. (2021). Evolutionary relationships and divergence of KNOTTED1-like family genes involved in salt tolerance and development in cotton (Gossypium hirsutum L.). Frontiers in Plant Science, 12, 774161.
Cited By - Lu, L., Qanmber, G., Li, J., Pu, M., Chen, G., Li, S., ... & Liu, Z. (2021). Identification and characterization of the ERF subfamily B3 group revealed GhERF13. 12 improves salt tolerance in upland cotton. Frontiers in Plant Science, 12, 705883.
Cited By - Zhang, H., Zhang, Y., Xu, N., Rui, C., Fan, Y., Wang, J., ... & Ye, W. (2021). Genome-wide expression analysis of phospholipase A1 (PLA1) gene family suggests phospholipase A1-32 gene responding to abiotic stresses in cotton. International Journal of Biological Macromolecules, 192, 1058-1074.
Cited By - Yuan, D., Grover, C. E., Hu, G., Pan, M., Miller, E. R., Conover, J. L., ... & Wendel, J. F. (2021). Parallel and intertwining threads of domestication in allopolyploid cotton. Advanced Science, 8(10), 2003634.
Cited By - Heidari, P., Abdullah, Faraji, S., & Poczai, P. (2021). Magnesium transporter gene family: genome-wide identification and characterization in Theobroma cacao, Corchorus capsularis, and Gossypium hirsutum of family Malvaceae. Agronomy, 11(8), 1651.
Cited By - Staton, M., Cannon, E., Sanderson, L. A., Wegrzyn, J., Anderson, T., Buehler, S., ... & Ficklin, S. (2021). Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. Briefings in Bioinformatics, 22(6), bbab238.
Cited By - Bano, N., Fakhrah, S., Mohanty, C. S., & Bag, S. K. (2021). Genome-wide identification and evolutionary analysis of gossypium tubby-like protein (TLP) gene family and expression analyses during salt and drought stress. Frontiers in Plant Science, 12, 667929.
Cited By - Zhang, X., Cao, J., Huang, C., Zheng, Z., Liu, X., Shangguan, X., ... & Chen, Z. (2021). Characterization of cotton ARF factors and the role of GhARF2b in fiber development. BMC genomics, 22(1), 1-15.
Cited By - Zhao, Y. P., Shen, J. L., Li, W. J., Wu, N., Chen, C., & Hou, Y. X. (2021). Evolutionary and characteristic analysis of RING-DUF1117 E3 ubiquitin ligase genes in Gossypium discerning the role of GhRDUF4D in Verticillium dahliae resistance. Biomolecules, 11(8), 1145.
Cited By - Grover, C. E., Yuan, D., Arick, M. A., Miller, E. R., Hu, G., Peterson, D. G., ... & Udall, J. A. (2021). The Gossypium anomalum genome as a resource for cotton improvement and evolutionary analysis of hybrid incompatibility. G3, 11(11), jkab319.
Cited By - Zhao, J., Wang, P., Gao, W., Long, Y., Wang, Y., Geng, S., ... & Qu, Y. (2021). Genome-wide identification of the DUF668 gene family in cotton and expression profiling analysis of GhDUF668 in Gossypium hirsutum under adverse stress. BMC genomics, 22(1), 395.
Cited By - Zhu, S., Wang, X., Chen, W., Yao, J., Li, Y., Fang, S., ... & Zhang, Y. (2021). Cotton DMP gene family: Characterization, evolution, and expression profiles during development and stress. International Journal of Biological Macromolecules, 183, 1257-1269.
Cited By - Peng, Z., Li, H., Sun, G., Dai, P., Geng, X., Wang, X., ... & He, S. (2021). CottonGVD: a comprehensive genomic variation database for cultivated cottons. Frontiers in Plant Science, 12, 803736.
Cited By - Li, Y., Feng, Z., Wei, H., Cheng, S., Hao, P., Yu, S., & Wang, H. (2021). Silencing of GhKEA4 and GhKEA12 revealed their potential functions under salt and potassium stresses in upland cotton. Frontiers in Plant Science, 12, 789775.
Cited By - Zhao, Y. P., Wu, N., Li, W. J., Shen, J. L., Chen, C., Li, F. G., & Hou, Y. X. (2021). Evolution and characterization of acetyl coenzyme A: Diacylglycerol acyltransferase genes in cotton identify the roles of GhDGAT3D in oil biosynthesis and fatty acid composition. Genes, 12(7), 1045.
Cited By - Jung, S., Lee, T., Gasic, K., Campbell, B. T., Yu, J., Humann, J., ... & Main, D. (2021). The Breeding Information Management System (BIMS): an online resource for crop breeding. Database, 2021, baab054.
Cited By - Zhu, Y., & Bao, Y. (2021). Genome-wide mining of MYB transcription factors in the anthocyanin biosynthesis pathway of Gossypium hirsutum. Biochemical Genetics, 59, 678-696.
Cited By - Feng, J., Chen, Y., Xiao, X., Qu, Y., Li, P., Lu, Q., & Huang, J. (2021). Genome-wide analysis of the CalS gene family in cotton reveals their potential roles in fiber development and responses to stress. PeerJ, 9, e12557.
Cited By - QIAO, K., MA, C., LV, J., ZHANG, C., MA, Q., & FAN, S. (2021). Identification, characterization, and expression profiles of the GASA genes in cotton. Journal of Cotton Research, 4, 1-16.
Cited By - Grover, C. E., Yuan, D., Arick, M. A., Miller, E. R., Hu, G., Peterson, D. G., ... & Udall, J. A. (2021). The Gossypium stocksii genome as a novel resource for cotton improvement. G3, 11(7), jkab125.
Cited By - Ma, C., Zhang, Q., Lv, J., Qiao, K., Fan, S., Ma, Q., & Zhang, C. (2021). Genome-wide analysis of the phospholipase D family in five cotton species, and potential role of GhPLD2 in fiber development and anther dehiscence. Frontiers in Plant Science, 12, 728025.
Cited By - Wei, H., Xue, Y., Chen, P., Hao, P., Wei, F., Sun, L., & Yang, Y. (2021). Genome-wide identification and functional investigation of 1-aminocyclopropane-1-carboxylic acid oxidase (ACO) genes in cotton. Plants, 10(8), 1699.
Cited By - Chen, P., Jian, H., Wei, F., Gu, L., Hu, T., Lv, X., ... & Wei, H. (2021). Phylogenetic analysis of the membrane attack complex/perforin domain-containing proteins in Gossypium and the role of GhMACPF26 in cotton under cold stress. Frontiers in Plant Science, 12, 684227.
Cited By - Park, S. H., Scheffler, J. A., Ray, J. D., & Scheffler, B. E. (2021). Identification of simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) that are associated with the nectariless trait of Gossypium hirsutum L. Euphytica, 217, 1-17.
Cited By - Chen, B., Wang, X., Lv, J., Ge, M., Qiao, K., Chen, Q., ... & Ma, Q. (2021). GhN/AINV13 positively regulates cotton stress tolerance by interacting with the 14–3-3 protein. Genomics, 113(1), 44-56.
Cited By - Bhargavi, M., Maneesha, K., Withanawasam, D. M., Aratikatla, K. R., Himabindu, S., Prashanth, M., ... & Vemireddy, L. R. (2021). A novel barcode system for rapid identification of rice (Oryza sativa L.) varieties using agro-morphological descriptors and molecular markers. Molecular Biology Reports, 48(3), 2209-2221.
Cited By - Liang, Y., Wang, J., Zheng, J., Gong, Z., Li, Z., Ai, X., ... & Chen, Q. (2021). Genome-wide comparative analysis of heat shock transcription factors provides novel insights for evolutionary history and expression characterization in cotton diploid and tetraploid genomes. Frontiers in Genetics, 12, 658847.
Cited By - Naoumkina, M., Thyssen, G. N., Fang, D. D., Li, P., & Florane, C. B. (2021). Elucidation of sequence polymorphism in fuzzless-seed cotton lines. Molecular Genetics and Genomics, 296, 193-206.
Cited By - Pei, W., Song, J., Wang, W., Ma, J., Jia, B., Wu, L., ... & Qu, Y. (2021). Quantitative trait locus analysis and identification of candidate genes for micronaire in an interspecific backcross inbred line population of Gossypium hirsutum× Gossypium barbadense. Frontiers in Plant Science, 12, 763016.
Cited By - Jung, S., Cheng, C. H., Buble, K., Lee, T., Humann, J., Yu, J., ... & Main, D. (2021). Tripal MegaSearch: a tool for interactive and customizable query and download of big data. Database, 2021, baab023.
Cited By - Garcia, D. F., Wang, Z., Guan, J., Yin, L., Geng, S., Li, A., & Mao, L. (2021). WheatGene: A genomics database for common wheat and its related species. The Crop Journal, 9(6), 1486-1491.
Cited By - Conover, J. L., Sharbrough, J., & Wendel, J. F. (2021). pSONIC: ploidy-aware syntenic orthologous networks identified via collinearity. G3, 11(8), jkab170.
Cited By - Milosavljevic, S., Kuo, T., Decarli, S., Mohn, L., Sese, J., Shimizu, K. K., ... & Robinson, M. D. (2021). ARPEGGIO: automated reproducible polyploid EpiGenetic GuIdance workflOw. BMC genomics, 22(1), 1-12.
Cited By - Li, H., Pan, Z., He, S., Jia, Y., Geng, X., Chen, B., ... & Du, X. (2021). QTL mapping of agronomic and economic traits for four F 2 populations of upland cotton. Journal of Cotton Research, 4, 1-12.
Cited By - Billings, G. T., Jones, M. A., Rustgi, S., Hulse-Kemp, A. M., & Campbell, B. T. (2021). Population structure and genetic diversity of the Pee Dee cotton breeding program. G3, 11(7), jkab145.
Cited By - Zhang, Y. J., Lan, Y., & Chen, B. (2021). ASDB: A comprehensive omics database for Anopheles sinensis. Genomics, 113(3), 976-982.
Cited By - Yu, L., Zhang, S., Liu, H., Wang, Y., Wei, Y., Ren, X., ... & Sun, C. (2021). Genome-Wide Analysis of SRNF Genes in Gossypium hirsutum Reveals the Role of GhSRNF18 in Primary Root Growth. Frontiers in Plant Science, 12, 731834.
- Wang, X., Chen, W., Yao, J., Li, Y., Yeboah, A., Zhu, S., & Zhang, Y. (2021). The Evolution and Expression Profiles of EC1 Gene Family during Development in Cotton. Genes, 12(12), 2001.
- Bao, Y., Mei, Y. Q., Xu, X., Liu, Y., & Wu, Z. Y. (2021). Changes in the promoter of a defender against apoptotic cell death gene affect its expression in upland cotton. Journal of Systematics and Evolution, 59(5), 1018-1026.
Cited By - Wang, S., ... & Yin, Z. (2021). Molecular Traits and Functional Analysis of the CLAVATA3/Endosperm Surrounding Region-Related Small Signaling Peptides in Three Species of Gossypium Genus. Frontiers in Plant Science, 12, 671626.
- Guo, A. H., Su, Y., Huang, Y., Wang, Y. M., Nie, H. S., Zhao, N., & Hua, J. P. (2021). QTL controlling fiber quality traits under salt stress in upland cotton (Gossypium hirsutum L.). Theoretical and Applied Genetics, 134, 661-685.
Cited By - Liu, D., Liu, X., Su, Y., Zhang, X., Guo, K., Teng, Z., ... & Zhang, Z. (2021). Genetic mapping and identification of Lgf loci controlling green fuzz in Upland cotton (Gossypium hirsutum L.). The Crop Journal, 9(4), 777-784.
Cited By - Shukla, R. P., Tiwari, G. J., Joshi, B., Song-Beng, K., Tamta, S., Boopathi, N. M., & Jena, S. N. (2021). GBS-SNP and SSR based genetic mapping and QTL analysis for drought tolerance in upland cotton. Physiology and Molecular Biology of Plants, 27(8), 1731-1745.
Cited By - Erpelding, J. E. (2021). Genetic evaluation of the brown fibre phenotype for Gossypium arboreum accession PI 615733. Plant Breeding, 140(2), 367-374.
Cited By - RAZZAQ, A., ZAFAR, M. M., ALI, A., HAFEEZ, A., BATOOL, W., SHI, Y., ... & YUAN, Y. (2021). Cotton germplasm improvement and progress in Pakistan. Journal of Cotton Research, 4(1), 1-14.
Cited By - Huang, X., Kou, J., Jing, W., Han, X., Liu, D., Ghasemzadeh, S., ... & Zhang, Y. (2021). Transcriptomic and metabolomic reprogramming in cotton after Apolygus lucorum feeding implicated in enhancing recruitment of the parasitoid Peristenus spretus. Journal of Pest Science, 1-14.
Cited By - Ji, Y., Mou, M., Zhang, H., Wang, R., Wu, S., Jing, Y., ... & Chen, L. (2023). GhWRKY33 negatively regulates jasmonate-mediated plant defense to Verticillium dahliae. Plant Diversity, 45(3), 337-346.
- Erpelding, J. E. (2021). Genetic characterization of the red coloured corolla phenotype for Gossypium arboreum accession PI 529731. Plant Breeding, 140(1), 142-149.
Cited By - Zhu, Y. Q., Qiu, L., Liu, L. L., Luo, L., Han, X. P., Zhai, Y. H., ... & Xing, Y. D. (2021). Identification and Comprehensive Structural and Functional Analyses of the EXO70 Gene Family in Cotton. Genes, 12(10), 1594.
Cited By - Hu, Q., Zeng, M., Wang, M., Huang, X., Li, J., Feng, C., ... & Huang, G. (2021). Family-wide evaluation of multiple C2 domain and transmembrane region protein in Gossypium hirsutum. Frontiers in Plant Science, 12, 767667.
Cited By - Erpelding, J. E. (2021). Genetic characterization of the brown lint phenotype for desi cotton (Gossypium arboreum) accession PI 408765 (cv.‘Sanguineum‐1’). Plant Breeding, 140(6), 1115-1122..
- Ali, F., Li, Y., Li, F., & Wang, Z. (2021). Genome-wide characterization and expression analysis of cystathionine β-synthase genes in plant development and abiotic stresses of cotton (Gossypium spp.). International Journal of Biological Macromolecules, 193, 823-837.
Cited By - Li, J., Yuan, D., Wang, P., Wang, Q., Sun, M., Liu, Z., ... & Wang, M. (2021). Cotton pan-genome retrieves the lost sequences and genes during domestication and selection. Genome biology, 22(1), 1-26.
Cited By - Asif, M., Siddiqui, H. A., Naqvi, R. Z., Amin, I., Asad, S., Mukhtar, Z., ... & Mansoor, S. (2021). Development of event-specific detection method for identification of insect resistant NIBGE-1601 cotton harboring double gene Cry1Ac-Cry2Ab construct. Scientific Reports, 11(1), 3479.
Cited By - Santosh, H. B., Meshram, M., Santhy, V., & Waghmare, V. N. (2021). Microsatellite marker based diversity analysis and DNA fingerprinting of Asiatic cotton (Gossypium arboreum) varieties of India. Journal of Plant Biochemistry and Biotechnology, 1-8.
Cited By - Chen, E., Hu, H., Yang, X., Li, D., Wei, Q., Zhou, F., ... & Li, C. (2021). GhLIP1, a lipoic acid synthase gene, negatively regulates leaf senescence in cotton. Plant Growth Regulation, 94, 73-85.
Cited By - Elassbli, H., Abdelraheem, A., Zhu, Y., Teng, Z., Wheeler, T. A., Kuraparthy, V., ... & Zhang, J. (2021). Evaluation and genome-wide association study of resistance to bacterial blight race 18 in US Upland cotton germplasm. Molecular Genetics and Genomics, 296, 719-729.
Cited By - Wang, G., Wang, X., Zhang, Y., Yang, J., Li, Z., Wu, L., ... & Ma, Z. (2021). Dynamic characteristics and functional analysis provide new insights into long non-coding RNA responsive to Verticillium dahliae infection in Gossypium hirsutum. BMC plant biology, 21, 1-13.
Cited By - Dou, L., Lv, L., KANG, Y., TIAN, R., HUANG, D., LI, J., ... & XIAO, G. (2021). Genome-wide identification and expression analysis of the GhIQD gene family in upland cotton (Gossypium hirsutum L.). Journal of Cotton Research, 4, 1-14.
Cited By - Ma, Z., Zhang, Y., Wu, L., Zhang, G., Sun, Z., Li, Z., ... & Wang, X. (2021). High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement. Nature genetics, 53(9), 1385-1391.
Cited By - Lu, Y., Cheng, X., Jia, M., Zhang, X., Xue, F., Li, Y., ... & Liu, F. (2021). Silencing GhFAR3. 1 reduces wax accumulation in cotton leaves and leads to increased susceptibility to drought stress. Plant Direct, 5(4), e00313.
Cited By - Wang, Q., Lu, X., Chen, X., Zhao, L., Han, M., Wang, S., ... & Ye, W. (2021). Genome-wide identification and function analysis of HMAD gene family in cotton (Gossypium spp.). BMC Plant Biology, 21(1), 1-26.
Cited By - Abdelraheem, A., Kuraparthy, V., Hinze, L., Stelly, D., Wedegaertner, T., & Zhang, J. (2021). Genome-wide association study for tolerance to drought and salt tolerance and resistance to thrips at the seedling growth stage in US Upland cotton. Industrial Crops and Products, 169, 113645.
Cited By - Lu, Q., Xiao, X., Gong, J., Li, P., Zhao, Y., Feng, J., ... & Yuan, Y. (2021). Identification of candidate cotton genes associated with fiber length through quantitative trait loci mapping and RNA-sequencing using a chromosome segment substitution line. Frontiers in Plant Science, 12, 796722.
Cited By - Liu, J., Magwanga, R. O., Xu, Y., Wei, T., Kirungu, J. N., Zheng, J., ... & Liu, F. (2021). Functional characterization of cotton C-repeat binding factor genes reveal their potential role in cold stress tolerance. Frontiers in Plant Science, 12, 766130.
Cited By - Baytar, A. A., Peynircioğlu, C., Sezener, V., Frary, A., & Doğanlar, S. (2021). Molecular mapping of QTLs for fiber quality traits in Gossypium hirsutum multi-parent recombinant inbred lines. Euphytica, 217(9), 181.
Cited By - Sang, N., Liu, H., Ma, B., Huang, X., Zhuo, L., & Sun, Y. (2021). Roles of the 14-3-3 gene family in cotton flowering. BMC Plant Biology, 21, 1-17.
Cited By - Yuan, R., Cao, Y., Li, T., Yang, F., Yu, L., Qin, Y., ... & Rong, J. (2021). Differentiation in the genetic basis of stem trichome development between cultivated tetraploid cotton species. BMC Plant Biology, 21(1), 1-14.
Cited By - Chen, B., Zhao, J., Fu, G., Pei, X., Pan, Z., Li, H., ... & Du, X. (2021). Identification and expression analysis of Tubulin gene family in upland cotton. Journal of Cotton Research, 4(1), 1-10.
Cited By - Zhang, D., Chen, C., Wang, H., Niu, E., Zhao, P., Fang, S., ... & Guo, W. (2021). Cotton fiber development requires the pentatricopeptide repeat protein GhIm for splicing of mitochondrial Nad7 mRNA. Genetics, 217(1), iyaa017.
Cited By - Kumar, P., Nimbal, S., Sangwan, R. S., Budhlakoti, N., Singh, V., Mishra, D. C., ... & Choudhary, R. R. (2021). Identification of novel marker–trait associations for lint yield contributing traits in upland cotton (Gossypium hirsutum L.) using SSRs. Frontiers in plant science, 12, 653270.
Cited By - Dou, L., Li, Z., Shen, Q., Shi, H., Li, H., Wang, W., ... & Xiao, G. (2021). Genome-wide characterization of the WAK gene family and expression analysis under plant hormone treatment in cotton. BMC genomics, 22, 1-17.
Cited By - Mustafa, R., Iqbal, M. J., Hamza, M., Rehman, A. U., Buzdar, I., Kamal, H., ... & Amin, I. (2021). Functional identification of G. hirsutum genes for their role in normal plant development and resistance against Verticillium dahliae using virus-induced gene silencing. European Journal of Plant Pathology, 161, 917-931.
- Salih, H. A. R. O. N., Wang, X., Chen, B., Jia, Y., Gong, W., & Du, X. (2021). Identification, characterization and expression profiling of circular RNAs in the early cotton fiber developmental stages. Genomics, 113(1), 356-365.
Cited By - Yogindran, S., Kumar, M., Sahoo, L., Sanatombi, K., & Chakraborty, S. (2021). Occurrence of Cotton leaf curl Multan virus and associated betasatellites with leaf curl disease of Bhut-Jolokia chillies (Capsicum chinense Jacq.) in India. Molecular Biology Reports, 48, 2143-2152.
Cited By - Jiang, X., Fan, L., Li, P., Zou, X., Zhang, Z., Fan, S., ... & Shang, H. (2021). Co-expression network and comparative transcriptome analysis for fiber initiation and elongation reveal genetic differences in two lines from upland cotton CCRI70 RIL population. PeerJ, 9, e11812.
Cited By - Zhang, S., Jiang, Z., Chen, J., Han, Z., Chi, J., Li, X., ... & Zhang, J. (2021). The cellulose synthase (CesA) gene family in four Gossypium species: phylogenetics, sequence variation and gene expression in relation to fiber quality in Upland cotton. Molecular Genetics and Genomics, 296, 355-368.
Cited By - Li, P. T., Chen, T. T., Palanga, K. K., Gong, W. K., Ge, Q., Gong, J. W., ... & Yuan, Y. L. (2021). Genome-wide quantitative trait loci mapping on Verticillium wilt resistance in 300 chromosome segment substitution lines from Gossypium hirsutum 3 Gossypium barbadense. G3: Genes| Genomes| Genetics, 11(5).
- Ge, D., Pan, T., Zhang, P., Wang, L., Zhang, J., Zhang, Z., ... & Lv, F. (2021). GhVLN4 is involved in multiple stress responses and required for resistance to Verticillium wilt. Plant Science, 302, 110629.
Cited By - Shaban, M., Khan, A. H., Noor, E., Malik, W., Ali, H. M. W., Shehzad, M., ... & Qayyum, A. (2021). A 13-Lipoxygenase, GhLOX2, positively regulates cotton tolerance against Verticillium dahliae through JA-mediated pathway. Gene, 796, 145797.
Cited By - Zhu, L., Andres, R. J., Zhang, K., & Kuraparthy, V. (2021). High‐density linkage map construction and QTL analysis of fiber quality and lint percentage in tetraploid cotton. Crop Science, 61(5), 3340-3360.
Cited By - Zhu, D., Le, Y., Zhang, R., Li, X., & Lin, Z. (2021). A global survey of the gene network and key genes for oil accumulation in cultivated tetraploid cottons. Plant Biotechnology Journal, 19(6), 1170-1182.
Cited By - Liu, Z., Yang, J., Li, S., Liu, L., Qanmber, G., Chen, G., ... & Wang, G. (2021). Systematic characterization of TCP gene family in four cotton species revealed that GhTCP62 regulates branching in Arabidopsis. Biology, 10(11), 1104.
Cited By - Chen, Q., Wang, W., Khanal, S., Han, J., Zhang, M., Chen, Y., ... & Wang, B. (2021). Transcriptome analysis reveals genes potentially related to high fiber strength in a Gossypium hirsutum line IL9 with Gossypium mustelinum introgression. Genome, 64(11), 985-995.
Cited By - Chen, B., Zhang, Y., Sun, Z., Liu, Z., Zhang, D., Yang, J., ... & Ma, Z. (2021). Tissue‐specific expression of GhnsLTPs identified via GWAS sophisticatedly coordinates disease and insect resistance by regulating metabolic flux redirection in cotton. The Plant Journal, 107(3), 831-846.
Cited By - Yang, S., Huang, L., Song, J., Liu, L., Bian, Y., Jia, B., ... & Zang, X. (2021). Genome-wide analysis of DA1-like genes in Gossypium and functional characterization of GhDA1-1A controlling seed size. Frontiers in plant science, 12, 647091.
Cited By - Zheng, J., Zhang, Z., Gong, Z., Liang, Y., Sang, Z., Xu, Y., ... & Wang, J. (2021). Genome-wide association analysis of salt-tolerant traits in terrestrial cotton at seedling stage. Plants, 11(1), 97.
Cited By - Raghavendra, K. P., Das, J., Kumar, R., Gawande, S. P., Santosh, H. B., Sheeba, J. A., ... & Waghmare, V. N. (2021). Genome-wide identification and expression analysis of the plant specific LIM genes in Gossypium arboreum under phytohormone, salt and pathogen stress. Scientific Reports, 11(1), 9177.
Cited By - Rashid, M. H. O., Li, P. T., Chen, T. T., Palanga, K. K., Gong, W. K., Ge, Q., ... & Yuan, Y. L. (2021). Genome-wide quantitative trait loci mapping on Verticillium wilt resistance in 300 chromosome segment substitution lines from Gossypium hirsutum× Gossypium barbadense. G3, 11(5), jkab027.
Cited By - Shakir, S., Jander, G., Nahid, N., Mubin, M., Younus, A., & Nawaz-ul-Rehman, M. S. (2021). Interaction of eukaryotic proliferating cell nuclear antigen (PCNA) with the replication-associated protein (Rep) of cotton leaf curl Multan virus and pedilanthus leaf curl virus. 3 Biotech, 11, 1-10.
Cited By - Huang, C., Shen, C., Wen, T., Gao, B., Zhu, D., Li, D., & Lin, Z. (2021). Genome-wide association mapping for agronomic traits in an 8-way Upland cotton MAGIC population by SLAF-seq. Theoretical and Applied Genetics, 134(8), 2459-2468.
Cited By - Cui, B., Li, Y., & Zhang, Y. (2021). A comparative genome‐wide analysis of the ABC transporter gene family among three Gossypium species. Crop Science, 61(4), 2489-2509.
Cited By - Zhang, R., Wang, N., Li, S., Wang, Y., Xiao, S., Zhang, Y., ... & Li, Z. (2021). Gibberellin biosynthesis inhibitor mepiquat chloride enhances root K+ uptake in cotton by modulating plasma membrane H+-ATPase. Journal of Experimental Botany, 72(18), 6659-6671.
Cited By - Cai, X., Jiang, Z., Tang, L., Zhang, S., Li, X., Wang, H., ... & Zhang, J. (2021). Genome-wide characterization of carotenoid oxygenase gene family in three cotton species and functional identification of GaNCED3 in drought and salt stress. Journal of Applied Genetics, 62(4), 527-543.
Cited By - Zhang, S., Guo, Y., Zhang, Y., Guo, J., Li, K., Fu, W., ... & Miao, Y. (2021). Genome-wide identification, characterization and expression profiles of the CCD gene family in Gossypium species. 3 Biotech, 11(5), 249.
Cited By - Ren, H., Su, Q., Hussain, J., Tang, S., Song, W., Sun, Y., ... & Qi, G. (2021). Slow anion channel GhSLAC1 is essential for stomatal closure in response to drought stress in cotton. Journal of Plant Physiology, 258, 153360.
Cited By - Lei, J., Dai, P., Li, J., Yang, M., Li, X., Zhang, W., ... & Liu, X. (2021). Tissue-specific CRISPR/Cas9 system of cotton pollen with GhPLIMP2b and GhMYB24 promoters. Journal of Plant Biology, 64, 13-21.
Cited By - Sun, W., Zhang, B., Deng, J., Chen, L., Ullah, A., & Yang, X. (2021). Genome-wide analysis of CBL and CIPK family genes in cotton: Conserved structures with divergent interactions and expression. Physiology and Molecular Biology of Plants, 27, 359-368.
Cited By - SHIRAKU, M. L., MAGWANGA, R. O., CAI, X., KIRUNGU, J. N., XU, Y., MEHARI, T. G., ... & LIU, F. (2021). Knockdown of 60S ribosomal protein L14-2 reveals their potential regulatory roles to enhance drought and salt tolerance in cotton. Journal of Cotton Research, 4(1), 1-14.
Cited By - Zheng, H., Wang, R., Jiang, Q., Zhang, D., Mu, R., Xu, Y., ... & Ke, L. (2021). Identification and functional analysis of a pollen fertility-associated gene GhGLP4 of Gossypium hirsutum L. Theoretical and Applied Genetics, 134, 3237-3247.
Cited By - Maeda, A. B., Wells, L. W., Sheehan, M. A., & Dever, J. K. (2021). Stories from the greenhouse—A brief on cotton seed germination. Plants, 10(12), 2807.
Cited By - Wang, X., Chen, B., Ma, C., Qiao, K., Li, Z., Wang, J., ... & Ma, Q. (2021). Systematical characterization of YUCCA gene family in five cotton species, and potential functions of YUCCA22 gene in drought resistance of cotton. Industrial Crops and Products, 162, 113290.
Cited By - Cheng, H., Feng, X., Zuo, D., Zhang, Y., Wang, Q., Lv, L., ... & Song, G. (2021). Gene expression correlation analysis reveals MYC-NAC regulatory network in cotton pigment gland development. International Journal of Molecular Sciences, 22(9), 5007.
Cited By - Li, Z., Liu, Z., Wei, Y., Liu, Y., Xing, L., Liu, M., ... & Peng, R. (2021). Genome-wide identification of the MIOX gene family and their expression profile in cotton development and response to abiotic stress. Plos one, 16(7), e0254111.
Cited By - Ma, L., Cheng, X., Wang, C., Zhang, X., Xue, F., Li, Y., ... & Liu, F. (2021). Explore the gene network regulating the composition of fatty acids in cottonseed. BMC plant biology, 21(1), 1-14.
Cited By - Tian, M., Wu, A., Zhang, M., Zhang, J., Wei, H., Yang, X., ... & Yu, S. (2021). Genome-Wide Identification of the Early Flowering 4 (ELF4) Gene Family in Cotton and Silent GhELF4-1 and GhEFL3-6 Decreased Cotton Stress Resistance. Frontiers in Genetics, 12, 686852.
Cited By - Li, Y., Zhou, Y., Dai, P., Ren, Y., Wang, Q., & Liu, X. (2021). Cotton Bsr-k1 modulates lignin deposition participating in plant resistance against Verticillium dahliae and Fusarium oxysporum. Plant Growth Regulation, 95, 283-292.
Cited By - Glover, N., Sheppard, S., & Dessimoz, C. (2021). Homoeolog inference methods requiring bidirectional best hits or synteny miss many pairs. Genome Biology and Evolution, 13(6), evab077.
Cited By - Shao, D., Li, Y., Zhu, Q., Zhang, X., Liu, F., Xue, F., & Sun, J. (2021). GhGSTF12, a glutathione S-transferase gene, is essential for anthocyanin accumulation in cotton (Gossypium hirsutum L.). Plant Science, 305, 110827.
Cited By - Ge, D., Jiang, J., An, X., Wang, L., Pan, T., Liu, K., ... & Hong, D. (2021). Genomics, expression, and function analyses of XB3 family genes in cotton. Genomics, 113(1), 245-256.
Cited By - Zhang, Z., Ma, W., Ren, Z., Wang, X., Zhao, J., Pei, X., ... & Ma, X. (2021). Characterization and expression analysis of wall-associated kinase (WAK) and WAK-like family in cotton. International Journal of Biological Macromolecules, 187, 867-879.
Cited By - Liu, S., Zhang, X., Xiao, S., Ma, J., Shi, W., Qin, T., ... & Zhu, L. (2021). A single‐nucleotide mutation in a GLUTAMATE RECEPTOR‐LIKE gene confers resistance to Fusarium Wilt in Gossypium hirsutum. Advanced Science, 8(7), 2002723.
Cited By - Feng, Y., Wei, R., Liu, A., Fan, S., Che, J., Zhang, Z., ... & Shang, H. (2021). Genome-wide identification, evolution, expression, and alternative splicing profiles of peroxiredoxin genes in cotton. Peerj, 9, e10685.
Cited By - Li, T., Gao, H., Tang, X., & Chen, G. (2021). GauCNL18 mediates Verticillium wilt resistance by activating the salicylic acid immunity pathway. Physiological and Molecular Plant Pathology, 116, 101719.
Cited By - Farooq, A., Shakeel, A., Chattha, W. S., Khan, T. M., Azhar, M. T., & Saeed, A. (2021). Genetic variability in cotton germplasm: predicting the agro physiological markers for high-temperature tolerance. The Journal of agricultural science, 159(1-2), 11-22.
Cited By - Wang, R., Liu, L., Kong, Z., Li, S., Lu, L., Chen, G., ... & Liu, Z. (2021). Identification of GhLOG gene family revealed that GhLOG3 is involved in regulating salinity tolerance in cotton (Gossypium hirsutum L.). Plant Physiology and Biochemistry, 166, 328-340.
Cited By - Li, Y., Li, Y., Chen, Y., Wang, M., Yang, J., Zhang, X., ... & Min, L. (2021). Genome-wide identification, evolutionary estimation and functional characterization of two cotton CKI gene types. BMC Plant Biology, 21(1), 1-15.
Cited By - Wang, M., Li, J., Wang, P., Liu, F., Liu, Z., Zhao, G., ... & Zhang, X. (2021). Comparative genome analyses highlight transposon-mediated genome expansion and the evolutionary architecture of 3D genomic folding in cotton. Molecular biology and evolution, 38(9), 3621-3636.
Cited By - Liu, H., Li, Y., & Huang, X. (2021). Genome-Wide Analysis of the Thioredoxin Gene Family in Gossypium hirsutum L. and the Role of the Atypical Thioredoxin Gene GhTRXL3-2 in Flowering. Journal of Plant Biology, 64(5), 461-473.
Cited By - Zhan, J., Chu, Y., Wang, Y., Diao, Y., Zhao, Y., Liu, L., ... & Ge, X. (2021). The miR164‐GhCUC2‐GhBRC1 module regulates plant architecture through abscisic acid in cotton. Plant Biotechnology Journal, 19(9), 1839-1851.
Cited By - Myo, T., Wei, F., Zhang, H., Hao, J., Zhang, B., Liu, Z., ... & Shi, G. (2021). Genome-wide identification of the BASS gene family in four Gossypium species and functional characterization of GhBASSs against salt stress. Scientific Reports, 11(1), 11342.
Cited By - Wei, T., Tang, Y., Jia, P., Zeng, Y., Wang, B., Wu, P., ... & Wu, J. (2021). A cotton lignin biosynthesis gene, GhLAC4, fine-tuned by ghr-miR397 modulates plant resistance against Verticillium dahliae. Frontiers in Plant Science, 12, 743795.
Cited By - Li, M., Hao, P., Zhang, J., Yang, X., Wu, A., Zhang, M., ... & Yu, S. (2021). A comprehensive identification and function analysis of the ATBS1 Interacting Factors (AIFs) gene family of Gossypium species in fiber development and under multiple stresses. Industrial Crops and Products, 171, 113853.
Cited By - Li, T., Zhang, Q., Jiang, X., Li, R., & Dhar, N. (2021). Cotton CC-NBS-LRR gene GbCNL130 confers resistance to Verticillium wilt across different species. Frontiers in plant science, 12, 695691.
Cited By - Yuan, Y., Cao, X., Zhang, H., Liu, C., Zhang, Y., Song, X. L., & Gai, S. (2021). Genome-wide identification and analysis of Oleosin gene family in four cotton species and its involvement in oil accumulation and germination. BMC Plant Biology, 21, 1-18.
Cited By - Zhou, F., Zheng, B., Wang, F., Cao, A., Xie, S., Chen, X., ... & Li, H. (2021). Genome-wide analysis of MDHAR gene family in four cotton species provides insights into fiber development via regulating AsA redox homeostasis. Plants, 10(2), 227.
Cited By - Hao, P., Wu, A., Chen, P., Wang, H., Ma, L., Wei, H., & Yu, S. (2021). GhLUX1 and GhELF3 are two components of the circadian clock that regulate flowering time of Gossypium hirsutum. Frontiers in Plant Science, 12, 691489.
Cited By - Yang, D., Liu, Y., Cheng, H., Wang, Q., Lv, L., Zhang, Y., ... & Zuo, D. (2021). Identification of the Group III WRKY Subfamily and the Functional Analysis of GhWRKY53 in Gossypium hirsutum L. Plants, 10(6), 1235.
Cited By - Tan, L., Salih, H., Htet, N. N. W., Azeem, F., & Zhan, R. (2021). Genomic analysis of WD40 protein family in the mango reveals a TTG1 protein enhances root growth and abiotic tolerance in Arabidopsis. Scientific reports, 11(1), 2266.
Cited By - Hong, S., Lim, Y. P., Kwon, S. Y., Shin, A. Y., & Kim, Y. M. (2021). Genome-wide comparative analysis of flowering-time genes; insights on the gene family expansion and evolutionary perspective. Frontiers in Plant Science, 12, 702243.
Cited By - Liu, W., Feng, J., Ma, W., Zhou, Y., & Ma, Z. (2021). GhCLCg-1, a vacuolar chloride channel, contributes to salt tolerance by regulating ion accumulation in upland cotton. Frontiers in Plant Science, 12, 765173.
Cited By - Sajjad, M., Wei, X., Liu, L., Li, F., & Ge, X. (2021). Transcriptome analysis revealed GhWOX4 intercedes myriad regulatory pathways to modulate drought tolerance and vascular growth in cotton. International Journal of Molecular Sciences, 22(2), 898.
Cited By - Zhou, F., Zheng, B., Wang, F., Cao, A., Xie, S., Chen, X., ... & Li, H. (2021). Genome-Wide Analysis of MDHAR Gene Family in Four Cotton Species Provides Insights into Fiber Development via Regulating AsA Redox Homeostasis. Plants, 2021, 10, 227.
Cited By - Chen, G., Liu, Z., Li, S., Qanmber, G., Liu, L., Guo, M., ... & Yang, Z. (2021). Genome-wide analysis of ZAT gene family revealed GhZAT6 regulates salt stress tolerance in G. hirsutum. Plant Science, 312, 111055.
Cited By - Hua, B., Chang, J., Xu, Z., Han, X., Xu, M., Yang, M., ... & Wu, S. (2021). HOMEODOMAIN PROTEIN8 mediates jasmonate‐triggered trichome elongation in tomato. New Phytologist, 230(3), 1063-1077.
Cited By - Yang, D., Li, F., Yi, F., Eneji, A. E., Tian, X., & Li, Z. (2021). Transcriptome analysis unravels key factors involved in response to potassium deficiency and feedback regulation of K+ uptake in cotton roots. International Journal of Molecular Sciences, 22(6), 3133.
Cited By - Burris, J. N., Makarem, M., Slabaugh, E., Chaves, A., Pierce, E. T., Lee, J., ... & Haigler, C. H. (2021). Phenotypic effects of changes in the FTVTxK region of an Arabidopsis secondary wall cellulose synthase compared with results from analogous mutations in other isoforms. Plant Direct, 5(8), e335.
Cited By - Wu, Yajie, Lei Zhang, Jinglong Zhou, Xiaojian Zhang, Zili Feng, Feng Wei, Lihong Zhao, Yalin Zhang, Hongjie Feng, and Heqin Zhu. "Calcium-dependent protein kinase GhCDPK28 was dentified and involved in verticillium wilt resistance in cotton." Frontiers in Plant Science 12 (2021): 772649.
Cited By - Voshall, A., Behera, S., Li, X., Yu, X. H., Kapil, K., Deogun, J. S., ... & Moriyama, E. N. (2021). A consensus-based ensemble approach to improve transcriptome assembly. BMC bioinformatics, 22, 1-24.
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