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Assembly - by genome sequencing project
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Annotation - by genome sequencing project
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| Sequencing Institute and Genome | |||||
|---|---|---|---|---|---|
| Assembly- by sequencing project | G_kirkii | K_coonew | K_drynew | K_kaunew | |
| FASTA Files | |||||
| * Chromosomes + unplaced or scaffolds | 12 | 12+1302 | 12 | 12+1019 | |
| Predicted genes - by sequencing project | G_kirkii | K_coonew | K_drynew | K_kaunew | |
| FASTA Files | |||||
| * Predicted coding sequences | 36,680 | 43,089 | 39,543 | 42,403 | |
| * Predicted protein sequences | 36,680 | 43,089 | 39,543 | 42,403 | |
| * Predicted gene sequences | |||||
| GFF3 Files | |||||
| * Predicted gene alignments | FTP | FTP* | FTP* | FTP* | |
| * Predicted gene with exon alignments | |||||
| Functional Annotation - by CottonGen team | G_kirkii | K_coonew | K_drynew | K_kaunew | |
| GFF3 | EXCEL | TXT files | |||||
| * Functional | |||||
| - GO from InterProScan | FTP | ||||
| - IPR from InterProScan | FTP | ||||
| - Genes in KEGG Pathways | FTP | ||||
| - Genes mapped to KEGG orthologs | FTP | ||||
| * Marker Alignments | |||||
| - RFLP-RAD (v. 11/18) | FTP | ||||
| - SSR (v.11/18) | FTP | ||||
| - SNP (v. 11/18) | FTP | ||||
| - InDel (v.11/18) | FTP | ||||
| * Protein Homologies | |||||
| - Arabidopsis thaliana Araport11 | FTP | ||||
| - NCBI nr-all (m/yy = 5/18) | FTP | ||||
| - Uniprot swissprot-all (1/19) | FTP | ||||
| - Uniprot trembl-all (1/19) | FTP | ||||
| * Unigene & Transcript Alignments | |||||
| - G.arboreum RefTrans v1 | FTP | ||||
| - G.barbadense RefTrans v1 | FTP | ||||
| - G.hirsutum RefTrans v1 | FTP | ||||
| - G.raimondii RefTrans v1 | FTP |