Gossypium hirsutum (AD1) 'TM-1' Genome Assemblies

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	Sequencing Institute and Genome
Assembly	BGI v1	NBI v1.1	JGI v1.1	HAU v1	ZJU v2.1	CRI v1	WHU v1	UTX v2.1	HAU v2.0^new
FASTA Files
* Chr + Scaffs	26+9128	26+288,273	26+5,329	26+2,164	26+12,072	26+584	26+316	26+999	26+556
GFF3 \| EXCEL \| TXT Files
* Chr + Scaffs	26+9128
Annotation	BGI v1	NBI v1.1	JGI v1.1	HAU v1	ZJU v2.1	CRI v1	WHU v1	UTX v2.1	HAU v2.0^new
FASTA Files
* Predicted CDS	76,943	70,478	87,800	115,835	72,761	79,703	74,350	107,216
* Predicted protein	76,943	70,478	87,800	115,835	72,761	79,703	74,350	107,216
* Predicted gene			66,577					75,376
GFF3 \| EXCEL \| TXT Files
* Gene alignments			FTP				FTP	FTP
* Gene+exon aligns	FTP	FTP	FTP	FTP	FTP	FTP		FTP	FTP
Annotation - CottonGen	BGI v1	NBI v1.1	JGI v1.1	HAU v1	ZJU v2.1	CRI v1	WHU v1	UTX v2.1	HAU v2.0^new
GFF3 \| EXCEL \| TXT files
* Functional
- InterPro GO	FTP	FTP	FTP	FTP	FTP	FTP	FTP	FTP
- InterPro IPR	FTP	FTP	FTP	FTP	FTP	FTP	FTP	FTP
- KEGG Pathways	FTP	FTP	FTP	FTP	FTP	FTP	FTP	FTP
- KEGG orthologs	FTP	FTP	FTP	FTP	FTP	FTP	FTP	FTP
* CottonGen Marker Alignments (11/18)
- RFLP-RAD	FTP	FTP	FTP	FTP	FTP	FTP	FTP	FTP
- SSRs	FTP	FTP	FTP	FTP	FTP	FTP	FTP	FTP
- SNPs	FTP	FTP	FTP	FTP	FTP	FTP	FTP	FTP
- InDels	FTP	FTP	FTP		FTP	FTP	FTP	FTP
* Protein Homologies
- Araport11	FTP	FTP	FTP	FTP(tair10)	FTP(tair10)	FTP	FTP	FTP
- NCBI nr (5/18)	FTP	FTP	FTP	FTP(4/18)	FTP	FTP	FTP	FTP
- Swissprot (1/19)	FTP	FTP	FTP	FTP(5/18)	FTP	FTP	FTP	FTP
- Trembl (1/19)	FTP	FTP	FTP	FTP(5/18)	FTP	FTP	FTP	FTP
* CottonGen RefTrans v1
- G. arboreum	FTP	FTP	FTP	FTP	FTP	FTP	FTP	FTP
- G. barbadense	FTP	FTP	FTP	FTP	FTP	FTP	FTP	FTP
- G. hirsutum	FTP	FTP	FTP	FTP	FTP	FTP	FTP	FTP
- G. raimondii	FTP	FTP	FTP	FTP	FTP	FTP	FTP	FTP

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