RNA Datasets (as of 2/18/2016)
| Organism Name | Study Accession | Cultivar | Instrument | Reference |
|---|---|---|---|---|
| Gossypium hirsutum | SRP039385 | NMGA-062 NMGA-105 |
Illumina HiSeq 2000 | |
| Gossypium hirsutum | SRP068118 |
DP5690 Li1 Li2 |
Illumina Genome Analyzer | Unpublished, USDA-ARS |
| Gossypium hirsutum | SRP055709 |
Barbaren713 RN DP90 SG747 LONREN1 RN |
Illumina Genome Analyzer IIx Illumina Genome Analyzer II |
Li et al. 2015 |
| Gossypium hirsutum | SRP055046 | Unspecified | Illumina HiSeq 2000 | Bedre et al. 2015 |
| Gossypium hirsutum | SRP052863 | Li2-DP5690 | Illumina Genome Analyzer | Naoumkina et al. 2015 |
| Gossypium hirsutum | SRP052863 | DP5690 | Illumina Genome Analyzer | Thyssen et al. 2015 |
| Gossypium hirsutum | SRP050874 | Unspecified | Illumina HiSeq 2000 | Unpublished, Clemson University |
| Gossypium hirsutum | SRP049806 | TM-1 | Illumina HiSeq 2000 | Unpublished, CAAS |
| Gossypium hirsutum | SRP049798 | T582 | Illumina HiSeq 2000 | Unpublished, CAAS |
| Gossypium hirsutum | SRP049797 | L7XW | Illumina HiSeq 2000 | Unpublished, CAAS |
| Gossypium hirsutum | SRP049795 | L7 | Illumina HiSeq 2000 | Unpublished, CAAS |
| Gossypium hirsutum | SRP049794 | Z17YW | Illumina HiSeq 2000 | Unpublished, CAAS |
| Gossypium hirsutum | SRP049791 | Z12XW | Illumina HiSeq 2000 | Unpublished, CAAS |
| Gossypium hirsutum | SRP049790 | Z12YW | Illumina HiSeq 2000 | Unpublished, CAAS |
| Gossypium hirsutum | SRP049786 | Z12 | Illumina HiSeq 2000 | Unpublished, CAAS |
| Gossypium hirsutum | SRP049434 |
TM-1 H1 |
Illumina HiSeq 2500 | Ma et al. 2016 |
| Gossypium hirsutum | SRP049330 | Unspecified | Illumina HiSeq 2000 | Tuttle et al. 2015 |
| Gossypium hirsutum | SRP049273 | Unspecified | Illumina HiSeq 2000 | Unpublished, CAAS |
| Gossypium hirsutum | SRP049272 | Unspecified | Illumina HiSeq 2000 | Unpublished, CAAS |
| Gossypium hirsutum | SRP047510 | Unspecified | Illumina HiSeq 2500 | Song et al. 2015 |
| Gossypium hirsutum | SRP047509 | Unspecified | Illumina HiSeq 2500 | Song et al. 2015 |
| Gossypium hirsutum | SRP047139 |
CSIL-35368 CSIL-31044 CSIL-31068 CSIL-31134 CSIL-35431 TM-1 |
Illumina HiSeq 2000 | Fang et al. 2014 |
| Gossypium hirsutum | SRP045952 | Unspecified | Illumina HiSeq 2000 | Unpublished, BGI |
| Gossypium hirsutum | SRP044705 | TM-1 | Illumina HiSeq 2000 | Unpublished, Nanjing Agricultural University |
| Gossypium hirsutum | SRP044705 | TM-1 (Texas Marker-1) | Illumina HiSeq 2000 | Wang et al. 2015 |
| Gossypium hirsutum | SRP042128 | JA-CMS | Illumina HiSeq 2000 | Yang et al. 2014 |
| Gossypium hirsutum | SRP041472 | BRS | Illumina HiSeq 2000 | Unpublished, UFRJ |
| Gossypium hirsutum | SRP041153 | Unspecified | Illumina HiSeq 2000 | Zhang et al. 2014 |
| Gossypium hirsutum | SRP034743 | Unspecified | Illumina HiSeq 2000 | Unpublished, Northwest Agriculture & Forestry University |
| Gossypium hirsutum | SRP033354 | Unspecified | Illumina Genome Analyzer | Xiao et al. 2014 |
| Gossypium hirsutum | SRP030288 |
Jingmian 13 Lumian 6 |
Illumina Genome Analyzer IIx Illumina HiSeq 2000 |
Chen et al. 2013 |
| Gossypium hirsutum | SRP029380 |
Lonren Fibremax |
Illumina HiSeq 2000 Illumina MiSeq |
Unpublished, J. Craig Venter Institute |
| Gossypium hirsutum | SRP029330 | TM-1 | Illumina HiSeq 2000 | Unpublished, J. Craig Venter Institute |
| Gossypium hirsutum | SRP028590 | Coker 315 | Illumina HiSeq 2000 | Unpublished, CSIRO |
| Gossypium hirsutum | SRP026618 | Siokra L-23 | Illumina HiSeq 2000 | Bowman et al. 2013 |
| Gossypium hirsutum | SRP026301 | Li2-DP5690 | Illumina Genome Analyzer IIx | Naoumkina et al. 2014 |
| Gossypium hirsutum | SRP026000 | Unspecified | Illumina HiSeq 2000 | Jiao et al. 2013 |
| Gossypium hirsutum | SRP022981 |
Alcala Sealand PD1 FiberMax TM-1 |
Illumina Genome Analyzer | Unpublished, University of California Davis |
| Gossypium hirsutum | SRP022981 | TM-1 | 454 GS FLX Titanium | Ashrafi et al. 2015 |
| Gossypium hirsutum | SRP022981 | TM-1 | Illumina Genome Analyzer | Hulse-Kemp et al. 2014 |
| Gossypium hirsutum | SRP020354 |
JFY-11 JFY-10 JFY-9 JFY-6 JFY-4 JFY-2 |
Illumina HiSeq 2000 | Jin et al. 2014 |
| Gossypium hirsutum | SRP018360 | Unspecified | Illumina HiSeq 2000 | Unpublished, CAAS |
| Gossypium hirsutum | SRP018356 | Unspecified | Illumina HiSeq 2000 | Unpublished, CAAS |
| Gossypium hirsutum | SRP018129 |
D8R8518 D8CMS8518 8518 |
Ion Torrent PGM | Suzuki et al. 2013 |
| Gossypium hirsutum | SRP018089 |
Mutant-Mar-S-3 Mutant-Mar-S-2 Mutant-Mar-S-1 WT-Mar-F-3 WT-Mar-F-2 WT-Mar-F-1 |
Illumina Genome Analyzer | Unpublished, CAAS |
| Gossypium hirsutum | SRP017861 | Unspecified | Illumina HiSeq 2000 | Unpublished, Chinese Academy of Agriculture Sciences (CAAS) |
| Gossypium hirsutum | SRP017574 | Unspecified | 454 GS FLX Titanium | Unpublished, National Botanical Research Institute |
| Gossypium hirsutum | SRP017168 |
TM-1 Yucatenense |
Illumina HiSeq 2000 | Unpublished, ARO-Volcani Center |
| Gossypium hirsutum | SRP017061 |
Maxxa TM1 CRB252 Coker 315 Cascot L-7 Yucatanese TX2094 TX2095 TX2090 Palmeri TX665 |
Illumina HiSeq 2000 | Yoo et al. 2014 |
| Gossypium hirsutum | SRP015881 |
Ys-3 Ys-1 |
Illumina Genome Analyzer II | Yang et al. 2013 |
| Gossypium hirsutum | SRP014583 |
Yucatanense TX2094 Alcala Maxxa |
Illumina Genome Analyzer IIx | Unpublished, University of Florida |
| Gossypium hirsutum | SRP013364 |
Yxy-9 Yxy-8 Yxy-7 Yxy-6 Yxy-5 Yxy-4 Yxy-3 Yxy-2 Yxy-1 |
Illumina Genome Analyzer | Unpublished, Huazhong Agricultural University |
| Gossypium hirsutum | SRP012138 | Unspecified | Illumina Genome Analyzer IIx | Zhang et al. 2014 |
| Gossypium hirsutum | SRP012037 |
Guazuncho 2 |
454 GS FLX Titanium | Unpublished, CIRAD |
| Gossypium hirsutum | SRP011398 | Unspecified | Illumina HiSeq 2000 | Sun et al. 2013 |
| Gossypium hirsutum | SRP010674 | Phy76 | 454 GS 20 | Unpublished, Texas Tech University |
| Gossypium hirsutum | SRP010197 | Unspecified | 454 GS FLX Titanium | Unpublished, National Botanical Research Institute |
| Gossypium hirsutum | SRP010197 | Unspecified | 454 GS FLX Titanium | Unpublished, National Botanical Research Institute |
| Gossypium hirsutum | SRP010021 | Unspecified | Illumina Genome Analyzer IIx | Unpublished, Peking University |
| Gossypium hirsutum | SRP010021 | Unspecified |
Illumina HiSeq 2000 Illumina Genome Analyzer IIx |
Wang et al. 2015 |
| Gossypium hirsutum | SRP008308 |
Coker 3 PM1218 GOLBI Lon-Ren FiberMax 958 |
454 GS FLX | Unpublished, UOKNOR |
| Gossypium hirsutum | SRP007975 | Coker 1218 | 454 GS FLX | Unpublished, Alabama A&M University |
| Gossypium hirsutum | SRP007615 | Unspecified | Illumina Genome Analyzer IIx | Silva et al. 2011 |
| Gossypium hirsutum | SRP007192 | Unspecified | 454 GS FLX Titanium | Unpublished, University of Texas at Austin |
| Gossypium hirsutum | SRP005961 |
Bycl Eycl |
Illumina Genome Analyzer | Li et al. 2012 |
| Gossypium hirsutum | SRP004853 | TM-1 | Illumina Genome Analyzer | Unpublished, Huazhong Agricultural University |
| Gossypium hirsutum | SRP001603 |
TX2094 Maxxa |
454 GS FLX Titanium 454 GS FLX | Flagel et al, 2012 |
| Gossypium hirsutum | SRP001603 |
TX2094 Maxxa |
Illumina Genome Analyzer II | Flagel et al, 2012 |
| Gossypium hirsutum | SRP001568 | Unspecified | 454 GS FLX | Pang et al, 2012 |
DNA Datasets (as of 2/18/2016)
| Organism Name | Study Accession | Cultivar | Instrument | Reference |
|---|---|---|---|---|
| Gossypium hirsutum | SRP050345 |
DH962 Jimian5 |
Illumina Genome Analyzer II | Wang et al. 2015 |
| Gossypium hirsutum | SRP047511 | Unspecified | Illumina HiSeq 2500 | Song et al. 2015 |
| Gossypium hirsutum | SRP047301 |
Acala Acala 1517 Auburn 56 Coker139 Coker's Foster Delfos 531C Dixie King Dixie Triumph Deltapine 15 Ferguson 406 King Lanart 57 Lankart Lone Star Mebane Mebane Triumph Paymaster 54 Paymaster 54B Rowden Malone Stoneville2B Trice 86-1 CIR7 CIR10 CIR12 CIR35 Esha28 J8891 Jimian 1 Junmian 1 Lumian 1 Shiyuan 321 Simian 2 Simian 3 |
Illumina HiSeq 2000 | Unpublished, Nanjing Agricultural University |
| Gossypium hirsutum | SRP047301 |
Sumian 12 Xinluzao 26 Xinluzao 1 Xinluzao 42 Brazil 011 Brazil 014 Brazil 0101 Brazil Cotton India 941 MA-6 India NV50-70 Tashkent 1 Tashkent 2 Tashkent 3 66-241 108 KK1543 SJ1470 Punctatum 3 Punctatum 5 Punctatum 12 Punctatum 14 Punctatum 25 Punctatum 24 Punctatum 31 Morrilli 2 Morrilli 38 Morrilli 45 Yucatanense 1 Yucatanense 3 Yucatanense 2 Yucatanense 5A Yucatanense 6 Richmondi 7 Richmondi 2 Richmondi 3 Marie-galante 7 Marie-galante 17 |
Illumina HiSeq 2000 | Unpublished, Nanjing Agricultural University |
| Gossypium hirsutum | SRP047301 |
Marie-galante 36 Marie-galante 62 Marie-galante 71 Latifolium 1 Latifolium 3 Latifolium 13 Latifolium 39 Latifolium 64 Latifolium 161 Latifolium 178 Palmeri 5 Palmeri 14 Palmeri 2 |
Illumina HiSeq 2000 | Unpublished, Nanjing Agricultural University |
| Gossypium hirsutum | SRP046301 | TX0231 | Illumina Genome Analyzer II | Cotton Research Group |
| Gossypium hirsutum | SRP045160 |
TM-1 Seland542 PD-1 Paymaster HS26 M-240 RNR FiberMax832 Coker3112 SureGrow747 Stoneville474 Tamcot Sphinx TX0231 |
Illumina HiSeq 2500 | Hulse-Kemp et al. 2015 |
| Gossypium hirsutum | SRP044705 | TM-1 | Illumina HiSeq 2000 | Wang et al. 2015 |
| Gossypium hirsutum | SRP029330 | TM-1 | Illumina HiSeq 2000 | Unpublished, J. Craig Venter Institute |
| Gossypium hirsutum | SRP019043 | Yucatanense | Illumina HiSeq 2000 | Unpublished, Mississippi State University |
| Gossypium hirsutum | SRP019039 |
GA120R1B3 |
Illumina HiSeq 2000 | Unpublished, Mississippi State University |
| Gossypium hirsutum | SRP017198 | Acala Maxxa | Illumina HiSeq 2000 | Unpublished, Mississippi State University |
| Gossypium hirsutum | SRP013723 |
Unspecified |
454 GS FLX Titanium | Unpublished, NBRI |
| Gossypium hirsutum | SRP009879 |
Unspecified |
454 GS FLX Titanium | Unpublished, BYU-DNASC-UL |
| Gossypium hirsutum | SRP009870 | Unspecified | 454 GS FLX Titanium | Unpublished, BYU-DNASC-UL |
| Gossypium hirsutum | SRP008334 |
Unspecified |
454 GS FLX | Unpublished, UOKNOR |