CottonGen April 2024 Newsletter released (4/24)

The 2024 April issue of the CottonGen Newsletter is issued to inform users about new or updated data and tools in CottonGen and provides a summary of the number of users, citations, and data over the years. Visit here HERE to read more.

-- G. hirsutum (AD1) 'UA48' v1.1 proteins (113,741)

Human-Readable Name-- G. hirsutum (AD1) 'UA48' v1.1 proteins (113,741)
Database Path/mainlab/web/temp/db/cottongen/GhirsutumUA48_569_v1.1.protein.blast.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. hirsutum (AD1) 'UA48' v1.1 CDs (113,741)

Human-Readable Name-- G. hirsutum (AD1) 'UA48' v1.1 CDs (113,741)
Database Path/mainlab/web/temp/db/cottongen/GhirsutumUA48_569_v1.1.transcripts.blast.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. hirsutum (AD1) 'UA48' v1.1 Genome (26 chrom. and 834 scaffolds)

Human-Readable NameG. hirsutum (AD1) 'UA48' v1.1 Genome (26 chrom. and 834 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/GhirsutumUA48_569_v1.1.genomic.blast.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for GhirsutumUA48_569_v1.1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. hirsutum (AD1) 'UGA230' v1.1 proteins (113,260)

Human-Readable Name-- G. hirsutum (AD1) 'UGA230' v1.1 proteins (113,260)
Database Path/mainlab/web/temp/db/cottongen/GhirsutumUGA230_568_v1.1.protein.blast.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. hirsutum (AD1) 'UGA230' v1.1 CDs (113,260)

Human-Readable Name-- G. hirsutum (AD1) 'UGA230' v1.1 CDs (113,260)
Database Path/mainlab/web/temp/db/cottongen/GhirsutumUGA230_568_v1.1.transcripts.blast.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. hirsutum (AD1) 'UGA230' v1.1 Genome (26 chrom. and 141 scaffolds)

Human-Readable NameG. hirsutum (AD1) 'UGA230' v1.1 Genome (26 chrom. and 141 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/GhirsutumUGA230_568_v1.1.genomic.blast.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for GhirsutumUGA230_568_v1.1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. hirsutum (AD1) 'CSX8308' v1.1 proteins (113,,264)

Human-Readable Name-- G. hirsutum (AD1) 'CSX8308' v1.1 proteins (113,,264)
Database Path/mainlab/web/temp/db/cottongen/GhirsutumCSX8308_570_v1.1.protein.blast.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink