GWAS data search tools set up at CottonGen (11/23)

GWAS data online searching is available.  Detailed information and how to use GWAS query tools are explained in the 4th CottonGen Newsletter

Two GWAS datasets, 2126 GWAS data for agronomic (Du 2019) and root system traits (Cui 2022) are available.

Cotton Cluster File Request

Submitted by Anonymous (not verified) on Thu, 11/30/2023 - 12:22
Name: 
Andres Langston
Email Address: 
Reveljen 124
Email Address: 
Reveljen 124
Organization: 
Gidonline Ua Andres Services
Acknowledgement: 
0
Acknowledgement4: 
0

Cotton Cluster File Request

Submitted by Anonymous (not verified) on Sun, 11/26/2023 - 01:20
Name: 
Agustin Cady
Email Address: 
Beekstraat 15
Email Address: 
Beekstraat 15
Organization: 
Agustin Фільми з українською озвучкою - https://kinogo-ua.com/9045-obman.html Services
Acknowledgement: 
0
Acknowledgement4: 
0

Cotton Cluster File Request

Submitted by Anonymous (not verified) on Sat, 11/25/2023 - 08:58
Name: 
Marty Medrano
Email Address: 
Strandengveien 24
Email Address: 
Strandengveien 24
Organization: 
Medrano Мультики з українською озвучкою - https://uakino.pl/74766-zacharovanij-budinok.html Marty LLC
Acknowledgement: 
0
Acknowledgement4: 
0

Cotton Cluster File Request

Submitted by Anonymous (not verified) on Mon, 11/20/2023 - 00:18
Name: 
Tussipkan Dilnur
Email Address: 
tdilnur@mail.ru
Email Address: 
tdilnur@mail.ru
Organization: 
National centre for Biotechnology
Acknowledgement: 
0
Acknowledgement4: 
0

G. hirsutum (AD1) PSC355 USDA v1.0 Genome (26 chrom.)

Human-Readable NameG. hirsutum (AD1) PSC355 USDA v1.0 Genome (26 chrom.)
Database Path/mainlab/web/temp/db/cottongen/AD1_USDA_PSC355_v1.genomic.jb.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for AD1_USDA_PSC355_v1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. hirsutum (AD1) PSC355 USDA v1.0 CDs (75,744)

Human-Readable Name-- G. hirsutum (AD1) PSC355 USDA v1.0 CDs (75,744)
Database Path/mainlab/web/temp/db/cottongen/AD1_USDA_PSC355_v1.transcripts.blast.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. hirsutum (AD1) PSC355 USDA v1.0 proteins (75,744)

Human-Readable Name-- G. hirsutum (AD1) PSC355 USDA v1.0 proteins (75,744)
Database Path/mainlab/web/temp/db/cottongen/AD1_PSC355_v1.0.protein.blast.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

Four new D-genome assembly and annotation datasets available (10/23)

Four new D-genome assembly and annotation datasets (Xu et al., 2023) contributed by CSSA-CRI are available for access or download.  They are: