Gossypium hirsutum (AD1) 'ZhongZhiMian No.2' genome CAAS_v1

Overview
Analysis NameGossypium hirsutum (AD1) 'ZhongZhiMian No.2' genome CAAS_v1
MethodPacBio Sequel; Illumina; NextDenovo (NextDenovo v. 2.3.0)
Source (v1)
Date performed2022-10-31

Gossypium hirsutum cultivar Zhongzhimian No.2 (cv. Zhongzhimian No.2, breeding by the Institute of Plant Protection, Chinese Academy of Agricultural Sciences) authority assessed by government at 2003. The cv. Zhongzhimian No.2 possesses the dual characteristics of high-yield and Verticillium wilt resistance that inherited from hybrid combination of G. hirsutum cv. Zhong No.99 and Gossypium barbadense Duomaozao, respectively; and became the parent stock of dozens of cultivars and until now planted over 15 million acres in China. The genome of cv. Zhongzhimian No.2 was sequenced and assembled by the combination sequence technologies of PacBio long read, Illumina short read and high-throughput chromosome conformation capture (Hi-C) method.

 Assembly Summary G. stocksii
 Total sequence length 2,331,216,053
 Total ungapped length 2,330,988,258
 Gaps between scaffolds 0
 Number of scaffolds 71
 Scaffold N50 109,264,372
 Scaffold L50 10
 Number of contigs 534
 Contig N50 20,521,768
 Contig L50 36
 Total number of chromosomes and plasmids 36
 Number of component sequences (WGS or clone) 534
Assembly

The chromosomes (pseudomolecules) and scaffolds for Gossypium hirsutum '(AD1)' genome. This file belongs to the CAAS (Chinese Academy of Agricultural Sciences) G. hirsutum Assembly v1.0

Chromosomes & scaffolds (FASTA format) G.hirsutum_CAAS_AD1.fa.gz