Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1

Markers
Marker alignments were performed by the CottonGen Team of Main Bioinformatics Lab at WSU. The alignment tool 'BLAT' was used to map marker sequences from CottonGen to the Gossypium herbaceum HAU v1.0 assembly. Markers required 90% identity over 97% of their length. For SSRs & RFLPs, gap size was restricted to 1000bp or less with less than 2 gaps. For dbSNPs and Indels gap size was restricted to 2bp with less than 2 gaps. The available files are in GFF3 format. Markers available in CottonGen are linked to JBrowse.
 
CottonGen SNP markers mapped to genome G.herbaceum_A1_HAU_wild_SNP
CottonGen RFLP markers mapped to genome G.herbaceum_A1_HAU_wild_RFLP
CottonGen SSR markers mapped to genome G.herbaceum_A1_HAU_wild_SSR
CottonGen InDel markers mapped to genome G.herbaceum_A1_HAU_wild_InDel