Expression: G. trilobum plant tissues used for Verticillium dahliae resistance study

Overview
Analysis NameExpression: G. trilobum plant tissues used for Verticillium dahliae resistance study
MethodIllumina HiSeq 4000 (Gtr), StringTie, and Ballgown
SourcePRJNA507768
Date performed2018-11-30

This data is from the following manuscript: Dong Q, Magwanga RO, Cai X, Lu P, Nyangasi Kirungu J, Zhou Z, Wang X, Wang X, Xu Y, Hou Y, Wang K, Peng R, Ma Z, Liu F. RNA-Sequencing, Physiological and RNAi Analyses Provide Insights into the Response Mechanism of the ABC-Mediated Resistance to Verticillium dahliae Infection in Cotton. Genes. 2019 Feb 01; 10(2):110. NCBI BioProject PRJNA507768, GEO Series accession number GSE123175. Expression values are in FPKM.

BioSample name tissue dev_stage treatment
  Gtr_0L1   leaf   one true leaf stage tissue was taken at 0 hour after Verticillium dahliae inoculation.
  Gtr_0L2   leaf   one true leaf stage tissue was taken at 0 hour after Verticillium dahliae inoculation.
  Gtr_0L3   leaf   one true leaf stage tissue was taken at 0 hour after Verticillium dahliae inoculation.
  Gtr_0R1   root   one true leaf stage tissue was taken at 0 hour after Verticillium dahliae inoculation.
  Gtr_0R2   root   one true leaf stage tissue was taken at 0 hour after Verticillium dahliae inoculation.
  Gtr_0R3   root   one true leaf stage tissue was taken at 0 hour after Verticillium dahliae inoculation.
  Gtr_0S1   stem   one true leaf stage tissue was taken at 0 hour after Verticillium dahliae inoculation.
  Gtr_0S2   stem   one true leaf stage tissue was taken at 0 hour after Verticillium dahliae inoculation.
  Gtr_0S3   stem   one true leaf stage tissue was taken at 0 hour after Verticillium dahliae inoculation.
  Gtr_12L1   leaf   one true leaf stage tissue was taken at 12 hours after Verticillium dahliae inoculation.
  Gtr_12L2   leaf   one true leaf stage tissue was taken at 12 hours after Verticillium dahliae inoculation.
  Gtr_12L3   leaf   one true leaf stage tissue was taken at 12 hours after Verticillium dahliae inoculation.
  Gtr_12R1   root   one true leaf stage tissue was taken at 12 hours after Verticillium dahliae inoculation.
  Gtr_12R2   root   one true leaf stage tissue was taken at 12 hours after Verticillium dahliae inoculation.
  Gtr_12R3   root   one true leaf stage tissue was taken at 12 hours after Verticillium dahliae inoculation.
  Gtr_12S1   stem   one true leaf stage tissue was taken at 12 hours after Verticillium dahliae inoculation.
  Gtr_12S2   stem   one true leaf stage tissue was taken at 12 hours after Verticillium dahliae inoculation.
  Gtr_12S3   stem   one true leaf stage tissue was taken at 12 hours after Verticillium dahliae inoculation.
  Gtr_48L1   leaf   one true leaf stage tissue was taken at 48 hours after Verticillium dahliae inoculation.
  Gtr_48L2   leaf   one true leaf stage tissue was taken at 48 hours after Verticillium dahliae inoculation.
  Gtr_48L3   leaf   one true leaf stage tissue was taken at 48 hours after Verticillium dahliae inoculation.
  Gtr_48R1   root   one true leaf stage tissue was taken at 48 hours after Verticillium dahliae inoculation.
  Gtr_48R2   root   one true leaf stage tissue was taken at 48 hours after Verticillium dahliae inoculation.
  Gtr_48R3   root   one true leaf stage tissue was taken at 48 hours after Verticillium dahliae inoculation.
  Gtr_48S1   stem   one true leaf stage tissue was taken at 48 hours after Verticillium dahliae inoculation.
  Gtr_48S2   stem   one true leaf stage tissue was taken at 48 hours after Verticillium dahliae inoculation.
  Gtr_48S3   stem   one true leaf stage tissue was taken at 48 hours after Verticillium dahliae inoculation.

 

Publication

Dong Q, Magwanga RO, Cai X, Lu P, Nyangasi Kirungu J, Zhou Z, Wang X, Wang X, Xu Y, Hou Y, Wang K, Peng R, Ma Z, Liu F. RNA-Sequencing, Physiological and RNAi Analyses Provide Insights into the Response Mechanism of the ABC-Mediated Resistance to Verticillium dahliae Infection in Cotton. Genes. 2019 Feb 01; 10(2):110.