g.arboreum_cottongen_reftransV1_0001670, g.arboreum_cottongen_reftransV1_0001670 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A0B0PIB6_GOSAR (Tyrosyl-DNA phosphodiesterase 2 OS=Gossypium arboreum GN=F383_07699 PE=4 SV=1) HSP 1 Score: 632.484 bits (1630), Expect = 0.000e+0 Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = -1 Query: 194 RKIREPNLGNEDCIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1129 RKIREPNLGNEDCIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRKEKKLLELPVLPSDHYGLLLTISSQ Sbjct: 94 RKIREPNLGNEDCIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRKEKKLLELPVLPSDHYGLLLTISSQ 405
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A0D2SYV2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G252100 PE=4 SV=1) HSP 1 Score: 619.002 bits (1595), Expect = 0.000e+0 Identity = 305/312 (97.76%), Postives = 309/312 (99.04%), Query Frame = -1 Query: 194 RKIREPNLGNEDCIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1129 RKIREPNLGNEDCIELGGFRGIKASNKAVQIE S+SGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISD+TASLRAYFCIQLSK PVKSFRREPFDNSIMGRELCMTEVE+SGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILEN PNVIFGGDMNWDDKLDG+FPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRKEKKLLELPVLPSDHYGLLLTISSQ Sbjct: 135 RKIREPNLGNEDCIELGGFRGIKASNKAVQIEDSHSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDNTASLRAYFCIQLSKLPVKSFRREPFDNSIMGRELCMTEVEVSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENNPNVIFGGDMNWDDKLDGRFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRKEKKLLELPVLPSDHYGLLLTISSQ 446
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A061GNQ8_THECC (Endonuclease/exonuclease/phosphatase family protein OS=Theobroma cacao GN=TCM_030246 PE=4 SV=1) HSP 1 Score: 503.056 bits (1294), Expect = 3.109e-173 Identity = 249/313 (79.55%), Postives = 278/313 (88.82%), Query Frame = -1 Query: 194 RKIREPNLGNEDCIELGGFRGIKASNKAVQIE-GSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1129 RKIR P++GNEDC+E FRGIKASNKAV +E SN G++++SLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPD+ICFQEVTP IYDIFR SNWW YRCS+S D A+ R YFC+QLSK PVKSF +PF NS+MGRELCMTEVE+ GG++ LVVAT+HLESP PAPPKWDQM+SKERVEQAK AINIL+N P+VIFGGDMNWDDKLDGQFPL DGWIDAW ELR AEDGWTYDTKSNQMLS NRTL+KRLDRF+C LN FKV ++MIG+E +PGLSY KEKNVRKEKKLLELPVLPSDHYGLLLTIS++ Sbjct: 136 RKIRYPDVGNEDCLESSSFRGIKASNKAVAVEEDSNLGAVESSLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDLICFQEVTPNIYDIFRQSNWWNVYRCSVSVDMANSRGYFCMQLSKRPVKSFSCKPFGNSVMGRELCMTEVEVFGGKS-LVVATSHLESPSPAPPKWDQMFSKERVEQAKEAINILKNNPDVIFGGDMNWDDKLDGQFPLPDGWIDAWRELRSAEDGWTYDTKSNQMLSGNRTLQKRLDRFVCNLNDFKVSGIDMIGIEALPGLSYIKEKNVRKEKKLLELPVLPSDHYGLLLTISTK 447
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A067GEZ3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012811mg PE=4 SV=1) HSP 1 Score: 430.254 bits (1105), Expect = 1.260e-144 Identity = 215/321 (66.98%), Postives = 247/321 (76.95%), Query Frame = -1 Query: 194 RKIREPNLGNEDCIELGGFRGIKASNKAV---------QIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1129 RKIR+ +DC G F G + +N + S SG++ SLKILSYNVWFREDLE+H RMK IGDLIQLHSPDIICFQE+TP IYDI S+WWKGYRCS+ ++ A R YFC+QLSK KSF EPF NSIMGRELC+ EVE+ G + LVVAT+HLESPCP PP WDQM+SKERVEQAK AIN+L+ PNVIF GDMNWDDKLDG+FPL DGW+DAW ELRP E+GWTYDTKSN+MLS NRTL+KRLDRF+C L FK+ ++MIGVE IPGL Y KEK VRKE + LELPVLPSDHYGLLLTIS+ Sbjct: 142 RKIRD-----QDCD--GDFDGFRVTNSVSIKDDTTSGPSADNSESGAVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQLSKLQAKSFTCEPFRNSIMGRELCVAEVEVQG-KKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPNVIFCGDMNWDDKLDGKFPLPDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 454
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A067GF93_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012811mg PE=4 SV=1) HSP 1 Score: 427.172 bits (1097), Expect = 8.076e-144 Identity = 205/281 (72.95%), Postives = 233/281 (82.92%), Query Frame = -1 Query: 194 EGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1036 + S SG++ SLKILSYNVWFREDLE+H RMK IGDLIQLHSPDIICFQE+TP IYDI S+WWKGYRCS+ ++ A R YFC+QLSK KSF EPF NSIMGRELC+ EVE+ G + LVVAT+HLESPCP PP WDQM+SKERVEQAK AIN+L+ PNVIF GDMNWDDKLDG+FPL DGW+DAW ELRP E+GWTYDTKSN+MLS NRTL+KRLDRF+C L FK+ ++MIGVE IPGL Y KEK VRKE + LELPVLPSDHYGLLLTIS+ Sbjct: 149 DNSESGAVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQLSKLQAKSFTCEPFRNSIMGRELCVAEVEVQG-KKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPNVIFCGDMNWDDKLDGKFPLPDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 428
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: I1KNE7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 426.017 bits (1094), Expect = 2.883e-143 Identity = 199/291 (68.38%), Postives = 240/291 (82.47%), Query Frame = -1 Query: 194 IKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1066 +K S+KA I G + + KILSYNVWFREDLE+HKRMKAIGDL+Q HSPD ICFQEVTP IYDIF+ S WW GYRCS+S + R YFC+ LSK PVKSF ++PF NSIMGRELC+ EVE + G T+LV+AT+HLESP P PPKWDQM+SKERV QA AIN+L+ +PNV+FGGDMNW+D LDGQ+PL DGW+DAW++LRP E+GWTYDTK+NQML+ NRT++KRLDRF+C+L FK+ +V+MIG+E IPG+SY KEK VRKE K L LP+LPSDHYGLLLTISS+ Sbjct: 143 VKPSDKATDITGDENIDSGKAFKILSYNVWFREDLELHKRMKAIGDLVQFHSPDFICFQEVTPNIYDIFKRSTWWSGYRCSVSSEMDYSRPYFCMVLSKLPVKSFSKKPFSNSIMGRELCIAEVEAARG-TSLVIATSHLESPSPGPPKWDQMFSKERVVQANEAINLLKKQPNVVFGGDMNWNDNLDGQYPLQDGWVDAWSQLRPNENGWTYDTKANQMLTGNRTVQKRLDRFICRLTDFKITSVDMIGMEAIPGVSYNKEKKVRKEIKQLVLPILPSDHYGLLLTISSK 432
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A0B2RMI0_GLYSO (Tyrosyl-DNA phosphodiesterase 2 OS=Glycine soja GN=glysoja_039517 PE=4 SV=1) HSP 1 Score: 424.861 bits (1091), Expect = 3.077e-143 Identity = 199/291 (68.38%), Postives = 240/291 (82.47%), Query Frame = -1 Query: 194 IKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1066 +K S+KA I G + + KILSYNVWFREDLE+HKRMKAIGDL+Q HSPD ICFQEVTP IYDIF+ S WW GYRCS+S + R YFC+ LSK PVKSF ++PF NSIMGRELC+ EVE + G T+LV+AT+HLESP P PPKWDQM+SKERV QA AIN+L+ +PNV+FGGDMNW+D LDGQ+PL DGW+DAW++LRP E+GWTYDTK+NQML+ NRT++KRLDRF+C+L FK+ +V+MIG+E IPG+SY KEK VRKE K L LP+LPSDHYGLLLTISS+ Sbjct: 114 VKPSDKATDITGDENIDSGKAFKILSYNVWFREDLELHKRMKAIGDLVQFHSPDFICFQEVTPNIYDIFKRSTWWSGYRCSVSSEMDYSRPYFCMVLSKLPVKSFSKKPFSNSIMGRELCIAEVEAARG-TSLVIATSHLESPSPGPPKWDQMFSKERVVQANEAINLLKKQPNVVFGGDMNWNDNLDGQYPLQDGWVDAWSQLRPNENGWTYDTKANQMLTGNRTVQKRLDRFICRLTDFKITSVDMIGMEAIPGVSYNKEKKVRKEIKQLVLPILPSDHYGLLLTISSK 403
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: B9NBH8_POPTR (Endonuclease/exonuclease/phosphatase family protein OS=Populus trichocarpa GN=POPTR_0004s01100g PE=4 SV=1) HSP 1 Score: 425.246 bits (1092), Expect = 3.801e-143 Identity = 209/299 (69.90%), Postives = 250/299 (83.61%), Query Frame = -1 Query: 200 IELGGFRGIKASNKAVQI--EGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTIS 1090 ++LG F+G +ASNK V + E +NS ++ S KILSYNVWFREDLE+H+RMKA+G+LIQLHSPD+IC QEV P IYDIF+ S+WWK Y+CS+S + AS R YFC+QLSK PVKSF +PF NSIMGRELC+ E+E+ G + +LVVAT+HLESPCPAPPKWDQM+SKERV+QAK AIN+L+ NVIF GDMNWDDKLDGQFP DGW+DAW EL+P ++GWTYDTKSNQMLS NR L+KRLDRF+C L FK+ ++MIG + IPGLSY KEK VRKE K+LELPVLPSDHYGLLLTIS Sbjct: 123 VKLGAFQGARASNKGVAVLTEDTNSAAVLGSFKILSYNVWFREDLEMHRRMKALGELIQLHSPDVICLQEVIPDIYDIFQRSSWWKAYQCSVSSEIASSRGYFCMQLSKLPVKSFSTKPFMNSIMGRELCIAELEVPG-KKSLVVATSHLESPCPAPPKWDQMFSKERVDQAKEAINLLKKNSNVIFCGDMNWDDKLDGQFPFPDGWVDAWVELKPGDNGWTYDTKSNQMLSGNRALQKRLDRFICSLCDFKISKIDMIGKDAIPGLSYMKEKKVRKEVKMLELPVLPSDHYGLLLTIS 420
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: I1MR47_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 421.779 bits (1083), Expect = 4.557e-142 Identity = 204/305 (66.89%), Postives = 245/305 (80.33%), Query Frame = -1 Query: 194 LGNEDCIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1108 + ++D E+ F+ +K SN I G + + KILSYNVWFREDLE+HKRMKAIGDL+QLHSPD ICFQEVTP IYDIF+GS WW Y CS+S + A R YFC+ LSK PVKSF +PF NSIMGRELC+ EVE + G+ LV+AT+HLESPCPAPPKWDQMYSKERV QA AIN+L+ +P+V+FGGDMNW+D+ DGQ+PL DGW+DAW++LRP E GWTYDTKSNQML+ NRTL+KRLDRF+C+ FK+ +V+MIG+E IPG+SY KEK VRKE K L LPVLPSDHYGLLLTISS+ Sbjct: 104 IDDDDSSEVINFK-VKPSN----ITGDENIDTGKAFKILSYNVWFREDLELHKRMKAIGDLVQLHSPDFICFQEVTPNIYDIFKGSAWWSVYCCSVSSEMAYSRPYFCMLLSKLPVKSFSNKPFSNSIMGRELCIAEVEAASGKP-LVIATSHLESPCPAPPKWDQMYSKERVVQANEAINLLKKQPSVVFGGDMNWNDQQDGQYPLQDGWVDAWSQLRPNESGWTYDTKSNQMLTGNRTLQKRLDRFICQFTDFKITSVDMIGMEAIPGVSYNKEKKVRKEIKQLVLPVLPSDHYGLLLTISSK 402
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A0B2P2A3_GLYSO (Tyrosyl-DNA phosphodiesterase 2 OS=Glycine soja GN=glysoja_004512 PE=4 SV=1) HSP 1 Score: 421.779 bits (1083), Expect = 4.557e-142 Identity = 204/305 (66.89%), Postives = 245/305 (80.33%), Query Frame = -1 Query: 194 LGNEDCIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1108 + ++D E+ F+ +K SN I G + + KILSYNVWFREDLE+HKRMKAIGDL+QLHSPD ICFQEVTP IYDIF+GS WW Y CS+S + A R YFC+ LSK PVKSF +PF NSIMGRELC+ EVE + G+ LV+AT+HLESPCPAPPKWDQMYSKERV QA AIN+L+ +P+V+FGGDMNW+D+ DGQ+PL DGW+DAW++LRP E GWTYDTKSNQML+ NRTL+KRLDRF+C+ FK+ +V+MIG+E IPG+SY KEK VRKE K L LPVLPSDHYGLLLTISS+ Sbjct: 104 IDDDDSSEVINFK-VKPSN----ITGDENIDTGKAFKILSYNVWFREDLELHKRMKAIGDLVQLHSPDFICFQEVTPNIYDIFKGSAWWSVYCCSVSSEMAYSRPYFCMLLSKLPVKSFSNKPFSNSIMGRELCIAEVEAASGKP-LVIATSHLESPCPAPPKWDQMYSKERVVQANEAINLLKKQPSVVFGGDMNWNDQQDGQYPLQDGWVDAWSQLRPNESGWTYDTKSNQMLTGNRTLQKRLDRFICQFTDFKITSVDMIGMEAIPGVSYNKEKKVRKEIKQLVLPVLPSDHYGLLLTISSK 402
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_XENTR (Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus tropicalis GN=tdp2 PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.113e-18 Identity = 86/310 (27.74%), Postives = 144/310 (46.45%), Query Frame = -1 Query: 212 GNEDCIELGGFRGIKASNKAVQIEGSNSGSIK----ASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDDKLDGQF-PLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLL 1105 ++ CI+L G + ++A SNS ++K + L++N+ ++ V +R + + + L+SPD++ QEV P Y+ + K S + T + YF + L K VK +E P+ +++M R L + V +SG L+ T+HLES + +SKER++Q + + + + P VIFGGD N D+ + + + +D W+ L +P +T+DTK N+ L A R R DR + G + IP Y + L+ PSDH+GLL Sbjct: 90 ASDSCIDLTGDDLVVTKSEATT---SNSSTVKQEDESHFSFLTWNIDGLDESNVAERARGVCSYLALYSPDVVFLQEVIPPYYE------YLKKRAVSYTIITGNEDEYFTAMMLKKSRVKLISQEIVPYPSTVMMRNLLVANVNISGNSICLM--TSHLEST--------KDHSKERLKQLDIVLKKMMDAPPLATVIFGGDTNLRDQEVAKIGGMPNNILDVWDFLGKPEHCRYTWDTKVNKNLRAPYICRLRFDRIFFR--------ASQEGSQVIPQSLYL------AGTEKLDCGRFPSDHWGLL 366
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_XENLA (Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus laevis GN=tdp2 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.487e-17 Identity = 87/316 (27.53%), Postives = 145/316 (45.89%), Query Frame = -1 Query: 212 LGNEDCIELGGFRGIKASNKAVQIEGSNSGSIK-----ASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDDKLDGQF-PLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFL--CKLNGFKVCA--VEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLL 1108 + ++ CI+L + ++AV SNS ++K + L++N+ ++ V +R +A+ + L++PD++ QEV P + + K S T + YF + L K VK +E P+ +++M R L + V +SG L+ T+HLES + +SKER++Q + + + P VIFGGD N D+ + L + +D W L +P +T+DTK N L A T R R DR L + G +V + ++G E + + PSDH+GLL Sbjct: 86 VTSDACIDLTSDDLVATKSEAVT---SNSSTVKQQEDESHFTFLTWNIDGLDESNVAERARAVCSCLALYTPDVVFLQEVIPPYCE------YLKKRAVSYKIITGNEDEYFTAMMLKKSRVKLISQEIVPYPSTLMMRNLLVANVNISGNSICLM--TSHLEST--------KDHSKERLKQLDTVLKKMMDAPPSATVIFGGDTNLRDQEVAKIGGLPNTILDVWEFLGKPEHCRYTWDTKLNNNLRACYTSRLRFDRILYRASMEGSQVIPQFLNLVGTEKLDCGRF------------------PSDHWGLL 364
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_MOUSE (Tyrosyl-DNA phosphodiesterase 2 OS=Mus musculus GN=Tdp2 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.952e-17 Identity = 85/302 (28.15%), Postives = 132/302 (43.71%), Query Frame = -1 Query: 200 SNKAVQIEGSNSGSIKASLKILSYNVWFREDLE---VHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPN---VIFGGDMNWDD----KLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVC--AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTIS 1057 +N +E S SG+ +S+ W + L+ + +R + + + L+SPD++ QEV P + K S + T + YF I L K VK +E PF N+ M R L V L G E L+ T+HLES + +S ER+ Q K + ++ P+ VIF GD N D K G L D DAW L +P +T+DTK+N L + R DR + + +++++G+E + + PSDH+GLL T++ Sbjct: 103 ANDTTILEASPSGTPLEDSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPY------CAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLM--TSHLES--------TREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGG---LPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRF------------------PSDHWGLLCTLN 367
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_BOVIN (Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus GN=TDP2 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.587e-15 Identity = 79/280 (28.21%), Postives = 125/280 (44.64%), Query Frame = -1 Query: 203 ILSYNVWFREDLEVH---KRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNW-DDKLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDR--FLCKLNGFKVC--AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTI 997 + S+ W + L+++ +R + + + L+SPD+I QEV P Y + K S T YF I L K VK +E PF N+ M R L V +SG E L + T+HLES + ++KER+ Q K+ + ++ P VIF GD N D ++ L + +D W L +P +T+DT+ N L + R DR F G + +++++G+E + + PSDH+GLL T+ Sbjct: 115 VFSFITWNIDGLDMNNLLERARGVCSYLTLYSPDVIFLQEVIPPYY------AYLKKKASSYKIITGREEGYFTAIMLKKSRVKFKSQEIIPFPNTQMMRNLLCVHVSVSGNE--LCLMTSHLEST--------RGHAKERMNQFKMVLEKMQEAPGSATVIFAGDTNLRDQEVTKCGGLPNNILDVWEFLGKPKHCQYTWDTQMNSNLGIAANCKLRFDRIFFRAAAEGGHIIPQSLDLLGLEKLDCGRF------------------PSDHWGLLCTL 360
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_RAT (Tyrosyl-DNA phosphodiesterase 2 OS=Rattus norvegicus GN=Tdp2 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.483e-15 Identity = 86/302 (28.48%), Postives = 131/302 (43.38%), Query Frame = -1 Query: 200 SNKAVQIEGSNSGSIKASLKILSYNVWFREDLE---VHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILE---NKPNVIFGGDMNWDD----KLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVC--AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTIS 1057 +N +E S SG+ +S+ W + L+ + +R + + + L+SPD++ QEV P R K R + + T + YF I L K VK +E PF N+ M R L V L G E L+ T+HLES + +S ER+ Q K ++ + VIF GD N D K G L D DAW L +P +T+DTK+N L + R DR + + ++++IG+E + + PSDH+GLL T++ Sbjct: 99 ANDTTILETSPSGTPLEDSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPSYCAYLR-----KRAR-TYNIITGNEEGYFTAILLKKGRVKFKGQEIIPFPNTKMMRNLLCVNVSLGGNEFCLM--TSHLEST--------RKHSAERINQLKTVFQKMQEATDSTTVIFAGDTNLRDQEVIKCGG---LPDNVFDAWEFLGKPKHCRYTWDTKANDNLRIPAACKHRFDRIFFRAEEGHLIPQSLDLIGLERLDCGRF------------------PSDHWGLLCTLN 363
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_CHICK (Tyrosyl-DNA phosphodiesterase 2 OS=Gallus gallus GN=TDP2 PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 7.027e-14 Identity = 86/309 (27.83%), Postives = 135/309 (43.69%), Query Frame = -1 Query: 212 CIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFP-VKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDD----KLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDR--FLCKLNGFKVCA--VEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLL 1093 CI+L ASN + S +S ++++N+ + + +R + + + L+SPD++ QEV P I + GY ++ YF L K P VK ++E F + M R L + V +SG E L + T+HLES + +SKER++Q ++ +N ++ + VIFGGD N D KL G L D W L +P +T+DT SN L + R DR F G + +++IG+E + + PSDH+GLL Sbjct: 93 CIDLTA--DDTASNTSSSGADSKQQDDDSSFSLITWNIDGLDLGNLQERARGVCSYLALYSPDVVFLQEVIPPYLCILQ--RRAGGYTII----PGNVDGYFTAMLLKKPRVKVLKQEIIRFPTTSMMRNLLVVHVNISGNE--LCLMTSHLEST--------RDHSKERMKQLQIVLNKMQEESQSTTVIFGGDTNLRDSEVAKLGG---LPKNITDIWEFLGKPQHCRYTWDTSSNTNLRIESKCKLRFDRLYFRPAAEGGHIIPRNMDLIGLEKLDCGRF------------------PSDHWGLL 362
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_HUMAN (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.489e-13 Identity = 74/271 (27.31%), Postives = 115/271 (42.44%), Query Frame = -1 Query: 203 VHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIF--RGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDDK-LDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCA---------VEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTI 958 + +R + + + L+SPD+I QEV P Y R SN+ T YF I L K VK +E PF ++ M R L V +SG E L + T+HLES + ++ ER+ Q K+ + ++ P VIF GD N D+ + L + +D W L +P +T+DT+ N L + R DR F+ A ++++G+E + + PSDH+GLL + Sbjct: 129 LSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNY--------EIITGHEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVHVNVSGNE--LCLMTSHLES--------TRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACKLRFDRIF-----FRAAAEEGHIIPRSLDLLGLEKLDCGRF------------------PSDHWGLLCNL 358
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_DANRE (Tyrosyl-DNA phosphodiesterase 2 OS=Danio rerio GN=tdp2 PE=1 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 1.187e-12 Identity = 89/325 (27.38%), Postives = 139/325 (42.77%), Query Frame = -1 Query: 197 NEDCIELGGFR---GIKASNKAVQIE-GSNSGSIKAS-LKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSN----WWKGYRCSISDDTASLRAYFC-IQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPN---VIFGGDMNW-DDKLDGQFPLTDGWIDAWNELRPAEDG-WTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVC------AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISS 1102 N DCI+L I ++K Q E G+ ++ S L I+S+NV + L + R + + + L++PD++ QE+ P + +++G SDD YF I L K VK E F + M R L + +V SG + L + T+HLES + S+ER +Q +V + ++ P VIF GD N D ++ L G D W +L E +T+DTK+N + R R DR L K + +IG+E + YT SDH+G+ T ++ Sbjct: 85 NADCIDLTAEEPTCSITVNSKENQAENGTAKSEVEDSKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAYVQYLKKRAVSYLFFEG-----SDD-----GYFTGIMLRKSRVKFLESEIICFPTTQMMRNLLIAQVTFSGQK--LYLMTSHLESC--------KNQSQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANVGGLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIF--LRSAKTAPPVTPDHMALIGMEKLDCGRYT------------------SDHWGIYCTFNT 369
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_CAEBR (5'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis briggsae GN=CBG18823 PE=3 SV=2) HSP 1 Score: 60.4622 bits (145), Expect = 7.989e-9 Identity = 67/238 (28.15%), Postives = 107/238 (44.96%), Query Frame = -1 Query: 368 NKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPM-IYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSK-FPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAIN----ILENKPN--VIFGGDMNWDDKLDGQFPLTDGWIDAWNELR-PAEDGWTYDTKSNQMLSANRTLRKRLDR 1054 N+AV S++G L ++S+N+ + + RMKA+ +++ +PDI+ QEV + I + + +K Y + + Y I +SK F V+ F NS M R L + E + G + LV THLES + + +R+ Q ++ I+ N P + FGGD+N D+ P DG +DAW + WT+DT N + R DR Sbjct: 80 NEAVMGPSSSAG---FELSLMSWNIDGLDGRSLATRMKAVATIVKKVNPDILFLQEVVDRDLEPIDKLQSLYKIYYSN-----KGCQYYTAILVSKMFEVEKHDVVHFQNSGMYRTLQIVEGSIGGMKVFLV--NTHLESM--------RDHRAQRMAQFSFCMDRCAEIIANNPGCFLFFGGDLNLRDEEISSIP--DGVLDAWVSAGCDTKTKWTWDTYKNDNKQGFNGAKMRFDR 297 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 9
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001670 ID=g.arboreum_cottongen_reftransV1_0001670; Name=g.arboreum_cottongen_reftransV1_0001670; organism=Gossypium arboreum; type=contig; length=1129bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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