SHIN-1546, SHIN-1546 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSHIN-1546
Genbank IDDT559909
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceDT559909.1
Source TypeEST
Primer 1SHIN-1546_F: CTCTACTTTCAATCCAAGGCG
Primer 2SHIN-1546_R: TTTCATTGGTTGCCATGCTA
Restriction EnzymeEcoRI; NotI
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT559909
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:69862574..69863709 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:110949274..110950425 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:66072801..66073938 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:4245750..4246884 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold5098supercontigscaffold5098:9914..11049 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:89914691..89915842 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold404supercontigScaffold404:101690..102824 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:119826474..119827625 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:68042607..68043742 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:118135631..118136782 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:69093701..69094835 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:116039580..116040731 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:65646389..65647523 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:112694159..112695310 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:65850271..65851408 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017633.1chromosomeCM017633.1:67768237..67769374 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:70269489..70270630 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:65708566..65709703 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:69354285..69355420 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:120768821..120769972 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:127062237..127063371 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:98334921..98336061 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:66611216..66612354 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:68191752..68192889 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:44773520..44774669 -Gossypium lobatum (D7) genome ISU_v1n/a
F11chromosomeF11:96475037..96476179 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT559909.1DT559909.1Gossypium hirsutumsequence_feature


Sequence
>SHIN-1546 ID=SHIN-1546; Name=SHIN-1546; organism=Gossypium hirsutum; type=genetic_marker; length=213bp
CTCTACTTTCAATCCAAGGCGAAAGAAAGAGAGAGAGAGAGAGAAAGAGA
GAGATCGAGATCGCCTTCTCAGGCTTTTGTGCCCTAAGAATTTTCACTTT
TCTCGCTGTAAATAAGTGCAAAAGTCGGTGAACTTTTGGGGACGTGTTCT
TACTTAGGTTCAGAGCCTTCATTCGAGGATTCTTGTTCTTCCTTAGCATG
GCAACCAATGAAA