Ghi_D05G12271

Transcript Overview
NameGhi_D05G12271
Unique NameGhi_D05G12271_WHU-TM1_v1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length2529
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:35043402..35049415 +Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gossypium hirsutum (AD1) 'TM-1' genome WHU_v12020-04-04
InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins2020-04-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
gdtwL1374Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL1326Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL3158Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL3010Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
hwtwL1289Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gautwL1143Gossypium australe (G2) genome CRI_v1.1Gossypium australe
fntwL1234Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gbtwL1392Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bhtwL2198Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
dttwL1523Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
gbtwL3172Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bhtwL5009Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
abtwL0112Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
awtwL1240Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
ghttwL1312Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
gktwL0743Gossypioides kirkii genome ISU_v3Gossypioides kirkii
ghtwL0999Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghtwL1364Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gtbtwL1226Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghztwL1325Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghttwL2976Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
grbtwL1187Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
hgstwL1375Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghtwL3121Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghztwL3007Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
hbtwL0804Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hgstwL3155Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
actwL1541Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hjtwL1299Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjtwL3000Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rbtwL2059Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
rjtwL1896Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
adtwL1412Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL0992Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hntwL1350Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL1421Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtwL3191Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL3318Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL3211Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hztwL1320Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL2995Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
twuhR1039Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR1090Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtttwL0979Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtotwL0938Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dfitwL0436Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dritwL1441Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dqitwL0574Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
ndmtwL1359Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL3101Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
bartwL1256Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL2861Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbtwL1238Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL2853Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
jmbtwL1342Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL3022Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
psctwL1252Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL2846Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adytwL1299Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL2954Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
hpftwL1319Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL2995Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
rna-gnl|WGS:JABFAA|Goari_00003760-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
Kirkii_Juiced.00g118670.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
Golon.005G361600-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
rna-gnl|WGS_VKGI|Godar.A05G363400.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS:JABFAE|Goarm_00003348-RAGossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
rna-gnl|WGS:JABEZZ|Gorai_00003505-RAGossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
EVM_prediction_Ga05G3567Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
rna-gnl|WGS:VKDL|Gobar.D05G342400.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
rna-gnl|WGS:JABEZX|Golob_00003772-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
Cotton_D_gene_10018786Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
TURN.05g113240.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
GB_D05G3475Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Ghe05G37160Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
Gbscaffold24155.1.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
Gar05G37270Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
gene-EPI10_009287-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
rna-gnl|WGS:VKDL|Gobar.A05G344100.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Gothu.00003943-RAGossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
gene-E1A91_A05G355400v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
D5.v1.pred_00003600-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
gene-E1A91_D05G349700v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
rna-gnl|WGS_VKGE|Gotom.D05G362400.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Gorai.009G343300.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
GB_A05G3480Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
GH_D05G3342Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Gohir.D05G320000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Ghir_A05G033820.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
augustus_masked-Dt_05_GB713-gene-47.28-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Gh_D05G325500.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Gh_A05G325300.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
A05G38320.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
CotAD_58321Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
genemark-Dt_05-g-47.47-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
Gohir.A05G318000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Ghir_D05G032990.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
Gh_A05G2778Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
mk-At_05-augustus-gene-76.271-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
genemark-Dt_05-proG-47.47-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
Gohir.A05G318000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
GhM_A05G3852.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
GH_A05G03258_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
D05G34750.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Gohir.D05G320000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
GH_D05G03461_HPF.2Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
GhirPA0501T087700.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
Ghicr24_A05G348900.2Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
GH_A05G3416Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
maker-At_05-aug-g-76.271-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
maker-At_05_GB713-augustus-gene-77.22-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Gh_D05G3081Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
GhM_D05G3701.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
GhirPD0501T327200.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ghi_D05G12271.geneGhi_D05G12271.gene_WHU-TM1_v1Gossypium hirsutumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghi_D05G12271.CDS1Ghi_D05G12271.CDS1_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_D05G12271.CDS2Ghi_D05G12271.CDS2_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_D05G12271.CDS3Ghi_D05G12271.CDS3_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_D05G12271.CDS4Ghi_D05G12271.CDS4_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_D05G12271.CDS5Ghi_D05G12271.CDS5_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_D05G12271.CDS6Ghi_D05G12271.CDS6_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_D05G12271.CDS7Ghi_D05G12271.CDS7_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_D05G12271.CDS8Ghi_D05G12271.CDS8_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_D05G12271.CDS9Ghi_D05G12271.CDS9_WHU-TM1_v1Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ghi_D05G12271Ghi_D05G12271_WHU-TM1_v1-proteinGossypium hirsutumpolypeptide
Ghi_D05G12271_WHU-TM1_v1Ghi_D05G12271_WHU-TM1_v1Gossypium hirsutumpolypeptide


InterPro
Analysis Name: InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins
Date Performed: 2020-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003855Potassium transporterTIGRFAMTIGR00794TIGR00794coord: 98..841
e-value: 8.8E-251
score: 832.1
IPR003855Potassium transporterPFAMPF02705K_transcoord: 99..672
e-value: 1.1E-186
score: 621.6
IPR003855Potassium transporterPANTHERPTHR30540OSMOTIC STRESS POTASSIUM TRANSPORTERcoord: 4..842
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..45
NoneNo IPR availablePANTHERPTHR30540:SF82coord: 4..842

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ghi_D05G12271_WHU-TM1_v1 ID=Ghi_D05G12271_WHU-TM1_v1; Name=Ghi_D05G12271; organism=Gossypium hirsutum; type=mRNA; length=2529bp
ATGGAAGAAGAAGATCGGATTGAAGAGAGTAGCCGCGTGAGACTGAGGGG
TAGAACTTTCAGTGGTGGAGGGGTGAACGAGTCAAGGTGGGTGGATGGTA
GTGAGGTGGACTCAGAGTCACCTCCTTTGTCATTGTTTGATGATAACGAA
GCCAAAGAAGGGTATGGATCTTTGAGGAGGAGACTGGTTAAGAAGCCCAA
AAGAGTTGATTCATTTGATGTTGAAGCCATGGAGATTGCTGGTACTCATG
GTCACCACCCTAAGGACATATCCACTTGGCGCACTCTTGCATTGGCCTTT
CAAACACTCGGGGTTGTGTATGGTGACATGGGCACAAGCCCTTTGTATGT
TTTCAGTGATGTCTTCAGCAAAGTCAAAATAGAATCAGAAGTGGATATCT
TGGGTGCTTTATCACTGGTGATGTATACAATAGCTCTACTCCCCTTGGTA
AAATACGTGTTTGTAGTGCTTAAAGCCAATGATAATGGGGAGGGGGGAAC
CTTTGCTTTGTACTCACTGATTTGCAGGTATGCGAAGGTCAACATGCTGC
CAAATCGTCAACCGGCAGATGAACAGATATCAAGTTTTAGGCTCAAACTG
CCTACTCCAGAGTTAGAAAGGGCTTTAAGCATAAAAGAGACTTTGGAAAG
GAGATCATCCTTGAAGACCCTCCTGTTGCTATTGGTCTTGATGGGAACTT
CCATGGTCATAGGGGATGGTATTCTGACCCCCGCAATATCAGTTATGTCT
GCTGTAAGTGGTCTTCAGGGTGCAGTAAAAGGCTTTGATACAACTGCGGT
GGTTGTTTTTTCAATTGTAATCCTTGTGGCATTGTTCAGCATACAACAGT
TTGGAACCAGTAAAGTTGGTTTCTCGTTTGCTCCCGCTCTTGCTTTGTGG
TTCTTCTCTCTGGGTTCAATAGGAATTTACAATCTAGTGAAGTATGATAT
TACAGTTATCAAGGCAGTCAATCCAGCTTATATTTATTTTTTCTTCAAGA
AGAACAGCAAAGATGCATGGTCTGCTCTTGGAGGTTGCATTCTGTGCATT
ACAGGAGCTGAAGCGATGTTTGCTGATTTAGGGCATTTCTCTGTACCAGC
CATACAGATTGCCTTTACCTTTGTAGTGTTTCCCTGTCTTCTCCTCGCAT
ACATGGGCCAGGCTGCGTTTCTAATGAAATACCCTGAGTCTTCAGATAGA
ATTTTCTATGATTCTGTTCCAGAGAGCCTTTTCTGGCCAGTTTTCGTGAT
AGCTACACTTGCTGCTATGATTGCTAGCCAAGCAATGATATCTGCTACAT
TTTCATGTGTCAAGCAGTCTATGGCTCTTGGTTGCTTCCCAAGAATGAAG
ATAATTCACACCTCGAGGAAACTGATGGGCCAAATTTATATCCCTGTGAT
AAATTGGTTTTTGATGATCATGTGTGTAGTTGTTGTTTCCATCTTCCGCA
GTACCACTGATATCGCCAATGCATATGGCATAGCCGAAGTTGGTGTTATG
TTGGTCACGACCACATTGGTGACACTTGTAATGCTTTTAATATGGCAGAC
CAATTTGTTTATGGCTTTGTGCTTTCCGCTCGTATTTGGATCAATAGAGC
TTATCTACTTCTCTGCTGTTCTTTCCAAAGTCTTAGAGGGAGGTTGGCTT
CCACTCGTTTTTGCTAGTTTCTTTCTCTCTGTGATGTACATTTGGAACTA
TGGCAGTGTGTTGAAGTACCAGAGTGAGGTCAGAGAGAAAATATCCATGG
ACTTCATGCTTGAACTCGGCTCTACACTTGGGACTGTGAGAACTCCGGGG
ATTGGTTTGTTATACAATGAGCTTGTACATGGCATTCCCTCGATATTCGG
GCAGTTTCTACTTAGCCTGCCTGCCATCCATTCTACTATTGTGTTTGTTT
GCATCAAATACGTCCCTATTCCTGTGGTCCCACAGGAGGAGAGATTTCTT
TTCCGAAGAGTTTGCCCGAAAGACTACCATATGTTTAGGTGTATTGCTAG
ATATGGTTACAAAGATATACGAAAGGAGGATCATCATGCATTTGAGCAAC
TTTTGGTTCAAAGCCTCGAGAATTTCTTGCGAAAAGAAGCTCAAGAGCTT
GCCTTGGAGAGTGGTTTGCAGGAAATGGATCTTGATAGTGTTTCGGTGAG
CTCAAGGGATTACAGTACCAGGGATGTTCCTGATAATGAGGAGCTTAAAG
TCCCATTGATGCTTGGCACGAGATCAGAAGAAGCAGAAACATCCAACTCA
GAAGCTGCTTCAGCAGCGTTGCCTTCTAGCATCATGTCATCAGAAATAGA
TCCAAGTTTGGAATATGAGCTTTCAGCATTGCGAGAAGCAATCGATTCTG
GGTTTACATATTTCCTGGCACATGGAGATGTGAGAGCCAAAAAGAACTCA
TTTTTCCTCAAGAAACTCGTCATAAACTACCTCTATGCATTCCTAAGGAG
AAACTGTCGAGCCGGGGCCGCAAATATGAGCGTACCGCACATGAATATCT
TGCAGGTAGGTATGACATACATGGTCTGA
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protein sequence of Ghi_D05G12271_WHU-TM1_v1

>Ghi_D05G12271_WHU-TM1_v1 ID=Ghi_D05G12271_WHU-TM1_v1; Name=Ghi_D05G12271_WHU-TM1_v1; organism=Gossypium hirsutum; type=polypeptide; length=843bp
MEEEDRIEESSRVRLRGRTFSGGGVNESRWVDGSEVDSESPPLSLFDDNE
AKEGYGSLRRRLVKKPKRVDSFDVEAMEIAGTHGHHPKDISTWRTLALAF
QTLGVVYGDMGTSPLYVFSDVFSKVKIESEVDILGALSLVMYTIALLPLV
KYVFVVLKANDNGEGGTFALYSLICRYAKVNMLPNRQPADEQISSFRLKL
PTPELERALSIKETLERRSSLKTLLLLLVLMGTSMVIGDGILTPAISVMS
AVSGLQGAVKGFDTTAVVVFSIVILVALFSIQQFGTSKVGFSFAPALALW
FFSLGSIGIYNLVKYDITVIKAVNPAYIYFFFKKNSKDAWSALGGCILCI
TGAEAMFADLGHFSVPAIQIAFTFVVFPCLLLAYMGQAAFLMKYPESSDR
IFYDSVPESLFWPVFVIATLAAMIASQAMISATFSCVKQSMALGCFPRMK
IIHTSRKLMGQIYIPVINWFLMIMCVVVVSIFRSTTDIANAYGIAEVGVM
LVTTTLVTLVMLLIWQTNLFMALCFPLVFGSIELIYFSAVLSKVLEGGWL
PLVFASFFLSVMYIWNYGSVLKYQSEVREKISMDFMLELGSTLGTVRTPG
IGLLYNELVHGIPSIFGQFLLSLPAIHSTIVFVCIKYVPIPVVPQEERFL
FRRVCPKDYHMFRCIARYGYKDIRKEDHHAFEQLLVQSLENFLRKEAQEL
ALESGLQEMDLDSVSVSSRDYSTRDVPDNEELKVPLMLGTRSEEAETSNS
EAASAALPSSIMSSEIDPSLEYELSALREAIDSGFTYFLAHGDVRAKKNS
FFLKKLVINYLYAFLRRNCRAGAANMSVPHMNILQVGMTYMV*
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mRNA from alignment at D05:35043402..35049415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ghi_D05G12271_WHU-TM1_v1 ID=Ghi_D05G12271_WHU-TM1_v1; Name=Ghi_D05G12271; organism=Gossypium hirsutum; type=mRNA; length=6014bp; location=Sequence derived from: D05:35043402..35049415+ (Gossypium hirsutum
ATGGAAGAAGAAGATCGGATTGAAGAGAGTAGCCGCGTGAGACTGAGGGG
TAGAACTTTCAGTGGTGGAGGGGTGAACGAGTCAAGGTGGGTGGATGGTA
GTGAGGTGGACTCAGAGTCACCTCCTTTGTCATTGTTTGATGATAACGAA
GCCAAAGAAGGGTATGGATCTTTGAGGAGGAGACTGGTTAAGAAGCCCAA
AAGAGTTGATTCATTTGATGTTGAAGCCATGGAGATTGCTGGTACTCATG
GTCACCACCCTAAGGTATTGAATTTGTTTTATCTCCATTTCGTGAAGATT
CTGCACTTCGAAGATATTTGCATATGATAATGCTTTTTGTTTCTTTTACT
CTTCAATGTTAATTCTTGGAACAGCTCTATTTTTCAACTTCTGATATATA
CTCTTCTGATATATAAATGAGTTCAGCAGTGGGAAGAGATTCATTAGACT
CATTGCTCTAGCAAGTGCTGTGATTGAAGGGTCCTCAAGTTTCTGTTATA
TTCATTTGGCTCAACTTGGCTCATTTATGACTTTTATATGGACTACAAAT
TTGGGCAAGTTTTTTCTTGTTGGTATATAGAGAAAATAGTGTCTTTCGAT
CAACGGTTGAGAGGAATTAGTACCTAAACCTTTACTTTCTAGAGGAGAAA
ATGATTAGGGTCCAACAGACTATAGCTAGGGAATTATACAAGTTGTTTTT
CTTTCGTTAGTGATTAGCTTTTTATACTGAGAATGCATGTATTTCTGTCA
TTGAAAGTCAACTACGGACCTTATAGTGTCTTCAATAACTTAAAAGAATT
GTTTTGTCATTTTTGCGAATGAACTTATTTCCATTAAGCTCAACTATATT
CTCTTACTAAAATGTAGTACTTTAATCAATCAGGACATATCCACTTGGCG
CACTCTTGCATTGGCCTTTCAAACACTCGGGGTTGTGTATGGTGACATGG
GCACAAGCCCTTTGTATGTTTTCAGTGATGTCTTCAGCAAAGTCAAAATA
GAATCAGAAGTGGATATCTTGGGTGCTTTATCACTGGTGATGTATACAAT
AGCTCTACTCCCCTTGGTAAAATACGTGTTTGTAGTGCTTAAAGCCAATG
ATAATGGGGAGGGTAAGGGCTTTTCATAGTAATCCTCTTATTCTCCATAC
TTTTTACTGGATATTTTGAAGATCATATACATGTTAACATATAAATTGAT
GCAATTGTAGGGGGAACCTTTGCTTTGTACTCACTGATTTGCAGGTATGC
GAAGGTCAACATGCTGCCAAATCGTCAACCGGCAGATGAACAGATATCAA
GTTTTAGGCTCAAACTGCCTACTCCAGAGTTAGAAAGGGCTTTAAGCATA
AAAGAGACTTTGGAAAGGAGATCATCCTTGAAGACCCTCCTGTTGCTATT
GGTCTTGATGGGAACTTCCATGGTCATAGGGGATGGTATTCTGACCCCCG
CAATATCAGGTAGATAGATGTGTACCAATCTTCCATTTAAGTTAACAAAA
TCAAATTTTAAACAAGTATTGCAATTTCTGTCTTTGCTTTTTCTGTGACT
GGTATTTGATGCTTTGAACCTGAATGTTGTCTTTGTTAGTTGCATTAAAA
TTTGTCTCACAACTATTTAGATTTCATGATGTCTTAAGTATGGCAGCTTC
TTCTAATTCATGTGATTCAAGAAAATGCTTTGTAACTCATGGTTGAATAA
CTTAATAGATTCTACCTTAGAAAATGAAAAAGATTTGATACAGTCCATTA
GTTCCATGTGACAGTTGTTGGGGCAGACCTCAAAATTTTAATATGCTATG
AAGAGAGCAAGCTTCTATTATCTTTAGTAGACATCATTTGGAGGGTCATC
CATGTAATGTGAGTATTGGAGCATAATGGATTCCTTACGGAGAATCGGTT
TGCAAATTCTGCAATTATATAGACAAGATAATTTCTTGCAAGTTTTATTG
GAGGATATTCAAACCTTGAAATGTGTTGAATCTGAAGCTTAAGTTGAATT
TTAAGATAAAGACTTTACAACCTTTTCTGTGAACAAGGTTCCCTGGCCTG
GGTTTACATGTAGTTAAGTTCTACTCTGCTTATGCATCTTTGTTGAAACG
AATTGTAAAGTTCCCTAGGACATTTCATTGATATCCAATAGTTAAATAAG
TTTGGTGTTTACTGTGCAATTGCTCACTGTAAGGTCAGAGAACTGCAGCT
ATGGCTTTGATATTTTGGTAGCCTAAGCATGGTAAGGAACTTGAAGTCTT
CTACTTGCATGTCTGAGTTAATTTCCACTTGCCTATCAAACAGCAAACCA
AATTTTTGCTCTTGTTCTTTGGTAGTTGAATTGGCGAAATGATGTTACTT
TCTCTGCTTGATAGAATTGATTGGCATTTTTTGTATGGGTTTTTCTTTTT
CTTGCTGTAGTGCTCCTAATTTTAGCTGCTGCTAAGTTAGCTATGTGCAC
CATCTTGCCCGAGCTAATACTAATATTAGATTTTGTAATTACTTTCTATT
GCAGTTATGTCTGCTGTAAGTGGTCTTCAGGGTGCAGTAAAAGGCTTTGA
TACAAGTGGGTACTTTTCATTTGCTTTGGTTTCATATAAAATATTTATGG
TTCATTAAGTGCCATCTTCTATAAAAGAACTGAAAAAGTATTTCTAGTAG
ATGGAGAATAGGGGCATAAGGCACCCACCATATGATTCCATTGTTTCTTC
TCTTCCATAAGGTACTTGTGTGTATTCTTATATTTATTTGAAGGAGCATC
TTGATGGTTGGGGGAAGTTGAGGAGCCTTTAGTTTGATTCTAAATGACTT
TCTACTTGGCTGAATATTGTATTACCCACTGGATACTGGTTCTTATTACA
TGTGCAACATGATACAAGGCAATTCTTATCTAATAAATAATGATTCAAGC
TTTAGCATATAAACTAATTTGGTTTTTCATTGATGAACATTAACGTTTAC
CTTCATTTATCTATTTGTTCACAGCTGCGGTGGTTGTTTTTTCAATTGTA
ATCCTTGTGGCATTGTTCAGCATACAACAGTTTGGAACCAGTAAAGTTGG
TTTCTCGTTTGCTCCCGCTCTTGCTTTGTGGTTCTTCTCTCTGGGTTCAA
TAGGAATTTACAATCTAGTGAAGTATGATATTACAGTTATCAAGGCAGTC
AATCCAGCTTATATTTATTTTTTCTTCAAGAAGAACAGCAAAGATGCATG
GTCTGCTCTTGGAGGTTGCATTCTGTGCATTACAGGTGCAGTATGCTTTT
AAATATTAGACCTTTAGCATTGAAGTAGTGATTATTGTCATAAAGGTCAT
GTCATTAGGAATAATTGAATGTTGAAAATCTGCAAAAACGATCGCGCTTC
AAGTGCAGATGAAATTATATATATTGATGATGCCCTAGTGGAATGCGAAA
GATGCACATGCTAGAGAATATCACCCTGCAAATACTTTTCTTGAAGCCCT
TAAAATTTTGTTGATTTATATGAATATACTTTTATAACCTGAAAAAAATA
TTACACTATACTTTTTTTTAATGTTTGAGTGAGCAACTTCTCCATATGAA
GTTGTAGTGTATAACCCTCTTTTAGTAGCATAACATGCTTATTTGTTATT
ACAGGAGCTGAAGCGATGTTTGCTGATTTAGGGCATTTCTCTGTACCAGC
CATACAGGTTGGCTCTTCTATTAATTCATCTTAGCACTTTCTTGAAGAAT
GACCTTGGCTTTCCCATTCACTAAATGACTCTTATAACAAAATTGTATTC
CCTTTTCAGATTGCCTTTACCTTTGTAGTGTTTCCCTGTCTTCTCCTCGC
ATACATGGGCCAGGCTGCGTTTCTAATGAAATACCCTGAGTCTTCAGATA
GAATTTTCTATGATTCTGTTCCAGGTTACTGTTGCCCGATGTGCTGCTTA
TCTTCTTCGGCCATTTCATTTATTTTTCAAATACTATAATCAGGAAATTT
TGGTTTTTGCTTGGTGCTGGTTTTGACACATTATATTTTGCTTCTTATGA
ACAAACAGAGAGCCTTTTCTGGCCAGTTTTCGTGATAGCTACACTTGCTG
CTATGATTGCTAGCCAAGCAATGATATCTGCTACATTTTCATGTGTCAAG
CAGTCTATGGCTCTTGGTTGCTTCCCAAGAATGAAGATAATTCACACCTC
GAGGAAACTGATGGGCCAAATTTATATCCCTGTGATAAATTGGTTTTTGA
TGATCATGTGTGTAGTTGTTGTTTCCATCTTCCGCAGTACCACTGATATC
GCCAATGCATATGGTTAGCAACTTCTCTTACATCAACCCCTCTTTCTCTC
CTCTTTGCTCCTCTCATTCCCGGAAAGTGTCCTTTTGGTTCATTCAAAAA
AATGATAGTTCCTTTTCTTAATGTTTTTTTACAATGTTAAGAAGGATCCC
TTGCTTTTACATGCTCTTTGGGTACCCTTTAAGTGTCTTTTCTGGCAGAC
TCGGGAAATATACTATTACTTTTATTAATGATATATGCAGCTTCGGAGTT
TTTACTCTAATATAGATTGATTGTGTTTCACATGTATTTGCATAGTTTCT
GATTTACAGATTTTTTAGTGTAAACATTGCAATTCTATATTTTTGAGCTT
GAGATTTATAATTGGTCATTAACAAATGGTTGCTATTTTCCTCTCTTGAT
ACTTTCTCATGTCATCGTAGCGCAATAACTCCCACTTTGTTTTGGATTCT
TATTTGTTTTTATTTATTTGATTGCTGTCTATCCCAACACTTAATGTTAT
ATTTCGCTGTATAGTTTTTTGTCAAATCTAATGCTTAATTGATTCTAAAA
CATCGTATTATTGTTATGCTATTGAGTAGAAATACTGATACGGCACTTTC
CACCTAAAATCATAATGATTCATGAACAAGGAAGGAGCTCATAAAGCTAA
TAGCTTCTAGTCTAATCTTATGATGGTTGCTTCTCTGATGCCCATCTAAA
TTGTTTTTGCAGGCATAGCCGAAGTTGGTGTTATGTTGGTCACGACCACA
TTGGTGACACTTGTAATGCTTTTAATATGGCAGACCAATTTGTTTATGGC
TTTGTGCTTTCCGCTCGTATTTGGATCAATAGAGCTTATCTACTTCTCTG
CTGTTCTTTCCAAAGTCTTAGAGGGAGGTTGGCTTCCACTCGTTTTTGCT
AGTTTCTTTCTCTCTGTGATGTACATTTGGAACTATGGCAGTGTGTTGAA
GTACCAGAGTGAGGTCAGAGAGAAAATATCCATGGACTTCATGCTTGAAC
TCGGCTCTACACTTGGGACTGTGAGAACTCCGGGGATTGGTTTGTTATAC
AATGAGCTTGTACATGGCATTCCCTCGATATTCGGGCAGTTTCTACTTAG
CCTGCCTGCCATCCATTCTACTATTGTGTTTGTTTGCATCAAATACGTCC
CTATTCCTGTGGTCCCACAGGAGGAGAGATTTCTTTTCCGAAGAGTTTGC
CCGAAAGACTACCATATGTTTAGGTGTATTGCTAGATATGGTTACAAAGA
TATACGAAAGGAGGATCATCATGCATTTGAGCAACTTTTGGTTCAAAGCC
TCGAGAATTTCTTGCGAAAAGAAGCTCAAGAGCTTGCCTTGGAGAGTGGT
TTGCAGGAAATGGATCTTGATAGTGTTTCGGTGAGCTCAAGGGATTACAG
TACCAGGGATGTTCCTGATAATGAGGAGCTTAAAGTCCCATTGATGCTTG
GCACGAGATCAGAAGAAGCAGAAACATCCAACTCAGAAGCTGCTTCAGCA
GCGTTGCCTTCTAGCATCATGTCATCAGAAATAGATCCAAGTTTGGAATA
TGAGCTTTCAGCATTGCGAGAAGCAATCGATTCTGGGTTTACATATTTCC
TGGCACATGGAGATGTGAGAGCCAAAAAGAACTCATTTTTCCTCAAGAAA
CTCGTCATAAACTACCTCTATGCATTCCTAAGGAGAAACTGTCGAGCCGG
GGCCGCAAATATGAGCGTACCGCACATGAATATCTTGCAGGTAGGTATGA
CATACATGGTCTGA
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Coding sequence (CDS) from alignment at D05:35043402..35049415+

>Ghi_D05G12271_WHU-TM1_v1 ID=Ghi_D05G12271_WHU-TM1_v1; Name=Ghi_D05G12271; organism=Gossypium hirsutum; type=CDS; length=2529bp; location=Sequence derived from: D05:35043402..35049415+ (Gossypium hirsutum
ATGGAAGAAGAAGATCGGATTGAAGAGAGTAGCCGCGTGAGACTGAGGGG
TAGAACTTTCAGTGGTGGAGGGGTGAACGAGTCAAGGTGGGTGGATGGTA
GTGAGGTGGACTCAGAGTCACCTCCTTTGTCATTGTTTGATGATAACGAA
GCCAAAGAAGGGTATGGATCTTTGAGGAGGAGACTGGTTAAGAAGCCCAA
AAGAGTTGATTCATTTGATGTTGAAGCCATGGAGATTGCTGGTACTCATG
GTCACCACCCTAAGGACATATCCACTTGGCGCACTCTTGCATTGGCCTTT
CAAACACTCGGGGTTGTGTATGGTGACATGGGCACAAGCCCTTTGTATGT
TTTCAGTGATGTCTTCAGCAAAGTCAAAATAGAATCAGAAGTGGATATCT
TGGGTGCTTTATCACTGGTGATGTATACAATAGCTCTACTCCCCTTGGTA
AAATACGTGTTTGTAGTGCTTAAAGCCAATGATAATGGGGAGGGGGGAAC
CTTTGCTTTGTACTCACTGATTTGCAGGTATGCGAAGGTCAACATGCTGC
CAAATCGTCAACCGGCAGATGAACAGATATCAAGTTTTAGGCTCAAACTG
CCTACTCCAGAGTTAGAAAGGGCTTTAAGCATAAAAGAGACTTTGGAAAG
GAGATCATCCTTGAAGACCCTCCTGTTGCTATTGGTCTTGATGGGAACTT
CCATGGTCATAGGGGATGGTATTCTGACCCCCGCAATATCAGTTATGTCT
GCTGTAAGTGGTCTTCAGGGTGCAGTAAAAGGCTTTGATACAACTGCGGT
GGTTGTTTTTTCAATTGTAATCCTTGTGGCATTGTTCAGCATACAACAGT
TTGGAACCAGTAAAGTTGGTTTCTCGTTTGCTCCCGCTCTTGCTTTGTGG
TTCTTCTCTCTGGGTTCAATAGGAATTTACAATCTAGTGAAGTATGATAT
TACAGTTATCAAGGCAGTCAATCCAGCTTATATTTATTTTTTCTTCAAGA
AGAACAGCAAAGATGCATGGTCTGCTCTTGGAGGTTGCATTCTGTGCATT
ACAGGAGCTGAAGCGATGTTTGCTGATTTAGGGCATTTCTCTGTACCAGC
CATACAGATTGCCTTTACCTTTGTAGTGTTTCCCTGTCTTCTCCTCGCAT
ACATGGGCCAGGCTGCGTTTCTAATGAAATACCCTGAGTCTTCAGATAGA
ATTTTCTATGATTCTGTTCCAGAGAGCCTTTTCTGGCCAGTTTTCGTGAT
AGCTACACTTGCTGCTATGATTGCTAGCCAAGCAATGATATCTGCTACAT
TTTCATGTGTCAAGCAGTCTATGGCTCTTGGTTGCTTCCCAAGAATGAAG
ATAATTCACACCTCGAGGAAACTGATGGGCCAAATTTATATCCCTGTGAT
AAATTGGTTTTTGATGATCATGTGTGTAGTTGTTGTTTCCATCTTCCGCA
GTACCACTGATATCGCCAATGCATATGGCATAGCCGAAGTTGGTGTTATG
TTGGTCACGACCACATTGGTGACACTTGTAATGCTTTTAATATGGCAGAC
CAATTTGTTTATGGCTTTGTGCTTTCCGCTCGTATTTGGATCAATAGAGC
TTATCTACTTCTCTGCTGTTCTTTCCAAAGTCTTAGAGGGAGGTTGGCTT
CCACTCGTTTTTGCTAGTTTCTTTCTCTCTGTGATGTACATTTGGAACTA
TGGCAGTGTGTTGAAGTACCAGAGTGAGGTCAGAGAGAAAATATCCATGG
ACTTCATGCTTGAACTCGGCTCTACACTTGGGACTGTGAGAACTCCGGGG
ATTGGTTTGTTATACAATGAGCTTGTACATGGCATTCCCTCGATATTCGG
GCAGTTTCTACTTAGCCTGCCTGCCATCCATTCTACTATTGTGTTTGTTT
GCATCAAATACGTCCCTATTCCTGTGGTCCCACAGGAGGAGAGATTTCTT
TTCCGAAGAGTTTGCCCGAAAGACTACCATATGTTTAGGTGTATTGCTAG
ATATGGTTACAAAGATATACGAAAGGAGGATCATCATGCATTTGAGCAAC
TTTTGGTTCAAAGCCTCGAGAATTTCTTGCGAAAAGAAGCTCAAGAGCTT
GCCTTGGAGAGTGGTTTGCAGGAAATGGATCTTGATAGTGTTTCGGTGAG
CTCAAGGGATTACAGTACCAGGGATGTTCCTGATAATGAGGAGCTTAAAG
TCCCATTGATGCTTGGCACGAGATCAGAAGAAGCAGAAACATCCAACTCA
GAAGCTGCTTCAGCAGCGTTGCCTTCTAGCATCATGTCATCAGAAATAGA
TCCAAGTTTGGAATATGAGCTTTCAGCATTGCGAGAAGCAATCGATTCTG
GGTTTACATATTTCCTGGCACATGGAGATGTGAGAGCCAAAAAGAACTCA
TTTTTCCTCAAGAAACTCGTCATAAACTACCTCTATGCATTCCTAAGGAG
AAACTGTCGAGCCGGGGCCGCAAATATGAGCGTACCGCACATGAATATCT
TGCAGGTAGGTATGACATACATGGTCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003855K+_transporter
Vocabulary: Biological Process
TermDefinition
GO:0071805potassium ion transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0015079potassium ion transmembrane transporter activity