Gm0347240.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Gm0347240.1 vs. NCBI nr
Match: gb|KAG8493065.1| (hypothetical protein CXB51_010383 [Gossypium anomalum]) HSP 1 Score: 318.161 bits (814), Expect = 1.624e-106 Identity = 152/167 (91.02%), Postives = 156/167 (93.41%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+GSVTPPT IDSENSGVGASSQ TGKRK TPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCD+KKN TGSLKYHIGSCKKNPSNVVD SQGQLVLPRKGVEGGEGHLSTWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGSVTPPTSIDSENSGVGASSQANVNTGKRKATPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDVKKNGTGSLKYHIGSCKKNPSNVVDPSQGQLVLPRKGVEGGEGHLSTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. NCBI nr
Match: gb|KAG8497237.1| (hypothetical protein CXB51_008430 [Gossypium anomalum]) HSP 1 Score: 323.553 bits (828), Expect = 9.434e-106 Identity = 152/167 (91.02%), Postives = 156/167 (93.41%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+GSVTPPT IDSENSGVGASSQ TGKRK TPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCD+KKN TGSLKYHIGSCKKNPSNVVD SQGQLVLPRKGVEGGEGHLSTWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGSVTPPTSIDSENSGVGASSQANVTTGKRKATPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDVKKNGTGSLKYHIGSCKKNPSNVVDPSQGQLVLPRKGVEGGEGHLSTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. NCBI nr
Match: gb|KAG8503324.1| (hypothetical protein CXB51_001365 [Gossypium anomalum]) HSP 1 Score: 321.627 bits (823), Expect = 2.843e-104 Identity = 152/167 (91.02%), Postives = 156/167 (93.41%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+GSVTPPT IDSENSGVGASSQ TGKRK TPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCD+KKN TGSLKYHIGSCKKNPSNVVD SQGQLVLPRKGVEGGEGHLSTWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGSVTPPTSIDSENSGVGASSQANVTTGKRKATPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDVKKNGTGSLKYHIGSCKKNPSNVVDPSQGQLVLPRKGVEGGEGHLSTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. NCBI nr
Match: ref|XP_017628746.1| (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Gossypium arboreum]) HSP 1 Score: 315.849 bits (808), Expect = 4.724e-104 Identity = 149/167 (89.22%), Postives = 155/167 (92.81%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+G++TPPT IDSENSG+GASSQ KG GKRK TPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKN TGSLKYHIGSCKKN SNVVDTSQGQLVLPRK VEGG GHLSTWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGNITPPTSIDSENSGIGASSQAKGTIGKRKATPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNGTGSLKYHIGSCKKNSSNVVDTSQGQLVLPRKRVEGGGGHLSTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. NCBI nr
Match: gb|KAG8484996.1| (hypothetical protein CXB51_021203 [Gossypium anomalum]) HSP 1 Score: 322.013 bits (824), Expect = 1.109e-103 Identity = 151/167 (90.42%), Postives = 156/167 (93.41%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+GSVTPPT IDSENSGVGASSQ TGKRK TPQRSEVWSHFTKIINSEGASKAKCNYCQK+FCCD+KKN TGSLKYHIGSCKKNPSNVVD SQGQLVLPRKGVEGGEGHLSTWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGSVTPPTSIDSENSGVGASSQANVTTGKRKATPQRSEVWSHFTKIINSEGASKAKCNYCQKKFCCDVKKNGTGSLKYHIGSCKKNPSNVVDPSQGQLVLPRKGVEGGEGHLSTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. NCBI nr
Match: gb|KAG8503358.1| (hypothetical protein CXB51_001344 [Gossypium anomalum]) HSP 1 Score: 322.398 bits (825), Expect = 1.423e-103 Identity = 152/167 (91.02%), Postives = 156/167 (93.41%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+GSVTPPT IDSENSGVGASSQ TGKRK TPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCD+KKN TGSLKYHIGSCKKNPSNVVD SQGQLVLPRKGVEGGEGHLSTWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGSVTPPTSIDSENSGVGASSQANVTTGKRKATPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDVKKNGTGSLKYHIGSCKKNPSNVVDPSQGQLVLPRKGVEGGEGHLSTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. NCBI nr
Match: gb|KAG8489971.1| (hypothetical protein CXB51_015455 [Gossypium anomalum]) HSP 1 Score: 320.087 bits (819), Expect = 2.826e-103 Identity = 151/167 (90.42%), Postives = 155/167 (92.81%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+GSVTPPT IDSENSGVGASSQ TGKRK TPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCD+KKN TGSLKYHIGSCKKNPSNVVD SQGQLVLPRKGVEGGEGH STWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGSVTPPTSIDSENSGVGASSQANVTTGKRKATPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDVKKNGTGSLKYHIGSCKKNPSNVVDPSQGQLVLPRKGVEGGEGHFSTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. NCBI nr
Match: gb|KAG8492408.1| (hypothetical protein CXB51_009688 [Gossypium anomalum]) HSP 1 Score: 320.087 bits (819), Expect = 4.788e-103 Identity = 151/167 (90.42%), Postives = 155/167 (92.81%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+GSVT PT IDSENSGVGASSQ TGKRK TPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCD+KKN TGSLKYHIGSCKKNPSNVVD SQGQLVLPRKGVEGGEGHLSTWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGSVTSPTSIDSENSGVGASSQANVTTGKRKATPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDVKKNGTGSLKYHIGSCKKNPSNVVDPSQGQLVLPRKGVEGGEGHLSTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. NCBI nr
Match: gb|KAG8487629.1| (hypothetical protein CXB51_018814 [Gossypium anomalum]) HSP 1 Score: 310.071 bits (793), Expect = 6.102e-103 Identity = 148/167 (88.62%), Postives = 153/167 (91.62%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+GSVTPPT IDSENSGVGASSQ TGKRK T RSEVWSHFTKIINSEGASKAKCNYCQKEFCCD+KKN TGSLKYHIGSCKKNPSNVVD SQGQLVLPR GVEGGEGH+STWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGSVTPPTSIDSENSGVGASSQANVTTGKRKATSPRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDVKKNGTGSLKYHIGSCKKNPSNVVDPSQGQLVLPRNGVEGGEGHISTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. NCBI nr
Match: gb|KAG8481873.1| (hypothetical protein CXB51_027172 [Gossypium anomalum]) HSP 1 Score: 320.472 bits (820), Expect = 7.931e-103 Identity = 151/167 (90.42%), Postives = 156/167 (93.41%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+GSVTPPT IDSENSGVGASSQ TGKRK TPQRS+VWSHFTKIINSEGASKAKCNYCQKEFCCD+KKN TGSLKYHIGSCKKNPSNVVD SQGQLVLPRKGVEGGEGHLSTWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGSVTPPTSIDSENSGVGASSQANVTTGKRKATPQRSKVWSHFTKIINSEGASKAKCNYCQKEFCCDVKKNGTGSLKYHIGSCKKNPSNVVDPSQGQLVLPRKGVEGGEGHLSTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Match: A0A6P4NLM5_GOSAR (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Gossypium arboreum OX=29729 GN=LOC108471673 PE=4 SV=1) HSP 1 Score: 315.849 bits (808), Expect = 2.272e-104 Identity = 149/167 (89.22%), Postives = 155/167 (92.81%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+G++TPPT IDSENSG+GASSQ KG GKRK TPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKN TGSLKYHIGSCKKN SNVVDTSQGQLVLPRK VEGG GHLSTWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGNITPPTSIDSENSGIGASSQAKGTIGKRKATPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNGTGSLKYHIGSCKKNSSNVVDTSQGQLVLPRKRVEGGGGHLSTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Match: A0A1U8NPQ7_GOSHI (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Gossypium hirsutum OX=3635 GN=LOC107950610 PE=4 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 2.408e-102 Identity = 149/167 (89.22%), Postives = 157/167 (94.01%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MST+PTSI+GSVTPPT IDSENSGVGAS QTKG TGKRK PQRSEVWSHFTK INSEGASKAKCNYC+KEFCCDMKKN TGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEG++STWRFDQEACR GLAQMI+IDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTKPTSIEGSVTPPTSIDSENSGVGASIQTKGTTGKRKAPPQRSEVWSHFTKFINSEGASKAKCNYCEKEFCCDMKKNGTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGNISTWRFDQEACRKGLAQMILIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Match: A0A0D2PR17_GOSRA (BED-type domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_005G104500 PE=4 SV=1) HSP 1 Score: 316.235 bits (809), Expect = 5.984e-102 Identity = 149/167 (89.22%), Postives = 155/167 (92.81%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI GSVTPPT IDS+NSGVGAS QTKG TGKRK PQRSEVWSHFTK INSEG SKAKCNYC+KEFCCDMKKN TGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEG+LSTWRFDQEACR GLAQMI+IDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIGGSVTPPTSIDSKNSGVGASIQTKGTTGKRKAPPQRSEVWSHFTKFINSEGVSKAKCNYCEKEFCCDMKKNGTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGNLSTWRFDQEACRKGLAQMILIDELPFKFVESEGFKKFMFVACPRFHIP 167
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Match: A0A1U8PLX7_GOSHI (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Gossypium hirsutum OX=3635 GN=LOC107960360 PE=4 SV=1) HSP 1 Score: 313.153 bits (801), Expect = 8.791e-102 Identity = 147/167 (88.02%), Postives = 154/167 (92.22%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
+STEPTSI+GSVTPPT IDSENSGVGASSQ GKRK TPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCD+K+N TGSLKYHIG+CKKNPSNVVDTSQGQLVLPR GVEGGEGHLSTWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VAC RF+IP
Sbjct: 37 ISTEPTSIEGSVTPPTSIDSENSGVGASSQANVTIGKRKATPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDVKRNGTGSLKYHIGACKKNPSNVVDTSQGQLVLPRNGVEGGEGHLSTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVACLRFHIP 203
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Match: A0A0D2VC56_GOSRA (BED-type domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_013G077200 PE=4 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 1.132e-100 Identity = 150/167 (89.82%), Postives = 154/167 (92.22%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MS EPTSI+GSVTPPTLIDSENSGVGASSQTKG TGKRK T QRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKN T SLKYHIGSCKKNPSNVVD SQGQLVLPRK EGGEG+LSTWRFDQEACR GLAQMIVIDELPFKFVES+GF KFM VA PRF+IP
Sbjct: 1 MSIEPTSIEGSVTPPTLIDSENSGVGASSQTKGTTGKRKAT-QRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNGTRSLKYHIGSCKKNPSNVVDNSQGQLVLPRKRFEGGEGNLSTWRFDQEACRKGLAQMIVIDELPFKFVESEGFKKFMFVASPRFHIP 166
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Match: A0A0D2NRW7_GOSRA (BED-type domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_002G232100 PE=4 SV=1) HSP 1 Score: 310.842 bits (795), Expect = 1.524e-99 Identity = 148/167 (88.62%), Postives = 155/167 (92.81%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+GSVTP + IDSEN GVGAS QTKG TGKRK PQRSEVWSHFTK INSEGASKAKCNYC+KEFCCDMKKN TGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEG+LSTWRFDQEACR GLAQMI+IDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGSVTPAS-IDSENLGVGASIQTKGTTGKRKAPPQRSEVWSHFTKFINSEGASKAKCNYCEKEFCCDMKKNGTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGNLSTWRFDQEACRKGLAQMILIDELPFKFVESEGFKKFMFVACPRFHIP 166
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Match: A0A1U8HS18_GOSHI (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Gossypium hirsutum OX=3635 GN=LOC107889036 PE=4 SV=1) HSP 1 Score: 309.301 bits (791), Expect = 4.621e-99 Identity = 149/167 (89.22%), Postives = 152/167 (91.02%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTE TSIKGSVTPPT IDSENSGVGASSQ TGKRK TPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCD+KKN TGSLKYHIGSCKKNPSNVVD SQGQLVLPRKGVE GEGHLSTWRFDQEACR GLAQM VIDELPFKF ES+GF KFM VACPRF+IP
Sbjct: 1 MSTEATSIKGSVTPPTSIDSENSGVGASSQANVTTGKRKATPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDVKKNGTGSLKYHIGSCKKNPSNVVDPSQGQLVLPRKGVEEGEGHLSTWRFDQEACRKGLAQM-VIDELPFKFAESEGFKKFMFVACPRFHIP 166
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Match: A0A1U8P7E5_GOSHI (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Gossypium hirsutum OX=3635 GN=LOC107955027 PE=4 SV=1) HSP 1 Score: 302.753 bits (774), Expect = 1.323e-97 Identity = 146/167 (87.43%), Postives = 153/167 (91.62%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+GSVTPPT IDSENS VGASSQTKG TGKRK T QRSEVWSHFTKIINS+G SKAKCNYCQKEFCCDMKKN TGSLKY+IGSCKKNPSNVVD SQGQLVLPRKGVE GEG+LSTWRFDQEACR GLAQMIVIDELPFKFVES+ F KFM V CP+F+IP
Sbjct: 1 MSTEPTSIEGSVTPPTSIDSENSRVGASSQTKGTTGKRKAT-QRSEVWSHFTKIINSDGTSKAKCNYCQKEFCCDMKKNTTGSLKYYIGSCKKNPSNVVDNSQGQLVLPRKGVERGEGNLSTWRFDQEACRKGLAQMIVIDELPFKFVESECFKKFMFVVCPKFHIP 166
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Match: A0A0D2VXQ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G102500 PE=4 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 3.624e-88 Identity = 136/167 (81.44%), Postives = 144/167 (86.23%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKFVESKGFNKFMVVACPRFYIP 167
MSTEPTSI+GSVTPPT IDS+NSGVGAS QTKG TGKRK PQ SEGASKAKCNYC+K+FCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVE GEG+LSTW FDQEACR GLAQMI+IDELPFKFVES+GF KFM VACPRF+IP
Sbjct: 1 MSTEPTSIEGSVTPPTSIDSKNSGVGASIQTKGTTGKRKAPPQ-------------SEGASKAKCNYCEKKFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEWGEGNLSTWIFDQEACRKGLAQMILIDELPFKFVESEGFKKFMFVACPRFHIP 154
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Match: A0A0D2T6C3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G001000 PE=4 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 1.237e-83 Identity = 129/147 (87.76%), Postives = 133/147 (90.48%), Query Frame = 0
Query: 1 MSTEPTSIKGSVTPPTLIDSENSGVGASSQTKGATGKRKVTPQRSEVWSHFTKIINSEGASKAKCNYCQKEFCCDMKKNDTGSLKYHIGSCKKNPSNVVDTSQGQLVLPRKGVEGGEGHLSTWRFDQEACRNGLAQMIVIDELPFKF 147
MSTE TSI+GSVTPPT IDSENS VGAS QT G TGKRK PQRSEVWSHFTKIINSEGASKAKCNY QKEFC DMKKN TGSLKYHIGSCKKNPSNVV+ +QGQLVLPRKGVEG EG+LSTWRFDQEACR GLAQMIVIDELPFKF
Sbjct: 1 MSTELTSIEGSVTPPTSIDSENSRVGASGQTNGTTGKRKAAPQRSEVWSHFTKIINSEGASKAKCNYFQKEFCYDMKKNGTGSLKYHIGSCKKNPSNVVENTQGQLVLPRKGVEGREGNLSTWRFDQEACRKGLAQMIVIDELPFKF 147 The following BLAST results are available for this feature:
BLAST of Gm0347240.1 vs. NCBI nr
Analysis Date: 2022-08-09 (BLASTP of HAU v1.0 Gossypium tomentosum (AD3) proteins vs NCBI nr ) Total hits: 10
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Analysis Date: 2022-08-09 (BLASTP of HAU v1.0 Gossypium tomentosum (AD3) proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Analysis Date: 2022-08-09 (BLASTP of HAU v1.0 Gossypium tomentosum (AD3) proteins vs UniProt Swissprot) Total hits: 0
BLAST of Gm0347240.1 vs. ExPASy TrEMBL
Analysis Date: 2022-08-09 (BLASTP of HAU v1.0 Gossypium tomentosum (AD3) proteins vs arabidopsis Araport11) Total hits: 0
InterPro
Analysis Name: InterProScan Analysis for HAU v1.0 Gossypium tomentosum (AD3) proteins
Date Performed: 2022-08-09
Sequences
The
following sequences are available for this feature:
mRNA sequence >Gm0347240.1_HAU-AD3_v1 ID=Gm0347240.1_HAU-AD3_v1; Name=Gm0347240.1; organism=Gossypium tomentosum; type=mRNA; length=507bpback to top protein sequence of Gm0347240.1_HAU-AD3_v1 >Gm0347240.1_HAU-AD3_v1 ID=Gm0347240.1_HAU-AD3_v1; Name=Gm0347240.1_HAU-AD3_v1; organism=Gossypium tomentosum; type=polypeptide; length=169bpback to top mRNA from alignment at A05:92142728..92144903- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Gm0347240.1_HAU-AD3_v1 ID=Gm0347240.1_HAU-AD3_v1; Name=Gm0347240.1; organism=Gossypium tomentosum; type=mRNA; length=2176bp; location=Sequence derived from: A05:92142728..92144903- (Gossypium tomentosumback to top Coding sequence (CDS) from alignment at A05:92142728..92144903- >Gm0347240.1_HAU-AD3_v1 ID=Gm0347240.1_HAU-AD3_v1; Name=Gm0347240.1; organism=Gossypium tomentosum; type=CDS; length=507bp; location=Sequence derived from: A05:92142728..92144903- (Gossypium tomentosumback to top |