CottonGen News Letter 2021 released (11/21)

The CottonGen newsletter 2021 is issued to inform users about new or updated data and tools in CottonGen. In addition to new and updated data, each issue will provide more information on data or tools on the featured tool/data section.

 

CottonGen annotations added to D8, D9 and D11 genomes (9/21)

CottonGen annotations are added to genomes G. trilobum (D8), G. laxum (D9), and G. schwendimanii (D11).  The annotation includes functional analysis, protein homologies, markers and CottonGen RefTrans alignments.

CottonGen Cotton Trait Ontology v2 in Crop Ontology (9/21)

The quality and consistency of agricultural data has greatly improved since the use of digital technologies applies to all steps of the research data lifecycle, particularly at the collection and management stages that integrate standardized ontology terms, such as lists of defined crop traits and variables.  The structured vocabulary Cotton Crop Ontology was established in 2016 by CottonGen curator with input from Drs.

CottonGen annotations added to D5 and D6 ISU assemblies (8/21)

 CottonGen annotations are added to G. raimondii (D5, 'D5-8' ISU_v1) and G. gossypioides (D6, ISU_v1) genome.  The annotation includes functional analysis, protein homologies, marker and trans alignments.

Cotton Cluster File Request

Name: 
Penni Delatte
Email Address: 
Holmatun 14
Email Address: 
Holmatun 14
Organization: 
Baskino 777 Смотреть фильмы онлайн & Delatte GmbH
Acknowledgement: 
0
Acknowledgement4: 
0

Cotton Cluster File Request

Name: 
Julieta Balfe
Email Address: 
45 Oxford Rd
Email Address: 
45 Oxford Rd
Organization: 
Balfe https://www.babytrekking.it/latemar-panorama-obereggen/ & Balfe Solutions
Acknowledgement: 
0
Acknowledgement4: 
0

Cotton Cluster File Request

Name: 
Dorthea Pinto
Email Address: 
Via Nazionale 4
Email Address: 
Via Nazionale 4
Organization: 
Jensvoegele & Pinto mbH
Acknowledgement: 
0
Acknowledgement4: 
0

-- G. stocksii E1 NSF v1.0 CDs (37,889)

Human-Readable Name-- G. stocksii E1 NSF v1.0 CDs (37,889)
Database Path/mainlab/web/temp/db/cottongen/Gosto.transcripts.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. stocksii E1 NSF v1.0 proteins (37,889)

Human-Readable Name-- G. stocksii E1 NSF v1.0 proteins (37,889)
Database Path/mainlab/web/temp/db/cottongen/Gosto.proteins.fa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. stocksii E1 NSF v1.0 Genome (13 chrom.)

Human-Readable NameG. stocksii E1 NSF v1.0 Genome (13 chrom.)
Database Path/mainlab/web/temp/db/cottongen/Gosto.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for E1_NSF_v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse