-- G. davidsonii D3d-27 ISU v1.0 CDs (34,870)

Human-Readable Name-- G. davidsonii D3d-27 ISU v1.0 CDs (34,870)
Database Path/mainlab/web/temp/db/cottongen/D3d_ISU_transcript.mod.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. davidsonii (D3d-27) ISU v1.0 proteins (34,870)

Human-Readable Name-- G. davidsonii (D3d-27) ISU v1.0 proteins (34,870)
Database Path/mainlab/web/temp/db/cottongen/D3d_ISU_protein.mod.fa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

CottonGen annotations added to AD1 NDM-8 genome (4/22)

CottonGen annotations added to Gossypium hirsutum 'NDM-8' genome HEAU v1. (Ma, et al., 2021). The annotation includes functional analysis, protein homologies, markers and CottonGen RefTran alignments.

New SNP marker and genome locations available (4/22)

Over 77K NAU_NBI SNP markers and positions on TM1 genome available.  Data can be accessed via Search Markers Or MegaSearch "Marker".

G. klotzschianum D3-k ISU v1.0 Genome (13 chrom. and 2534 scaffolds)

Human-Readable NameG. klotzschianum D3-k ISU v1.0 Genome (13 chrom. and 2534 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/D3k_ISU_sublib.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for D3k ISU v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. klotzschianum D3-k ISU v1.0 CDs (34,902)

Human-Readable Name-- G. klotzschianum D3-k ISU v1.0 CDs (34,902)
Database Path/mainlab/web/temp/db/cottongen/D3k_ISU_transcript.mod.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. klotzschianum (D3-k) ISU v1.0 proteins (34,902)

Human-Readable Name-- G. klotzschianum (D3-k) ISU v1.0 proteins (34,902)
Database Path/mainlab/web/temp/db/cottongen/D3k_ISU_protein.mod.fa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

New short video tutorial 'How to use the Marker Search' available (3/22)

CottonGen specific videos are in progress, but please check out the tutorial videos for our other databases on the Main Lab YouTube channel.  The searches and tools use the same framework across all of our databases.

Searches:

Tools:

New map, QTL, and phenotype data available (2/22)

A barbadense genetic map developed based on the cross of between two Indian cultivars with 29 QTLs of 13 yield component and fiber quality traits and phenotype data available. (2/22)