CottonGen annotations added to three new diploid genomes (12/22)

CottonGen functional annotations, protein homologies, markers and CottonGen RefTran alignments available on below new B1, E1, and G1 genome assemblies.  To view and/or download these data, click on their links at below.

-- G. bickii (G1) ZJU v1.0 CDs (43,790)

Human-Readable Name-- G. bickii (G1) ZJU v1.0 CDs (43,790)
Database Path/mainlab/web/temp/db/cottongen/Gbi_V1.0.cds.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. bickii (G1) ZJU v1.0 proteins (43,790)

Human-Readable Name-- G. bickii (G1) ZJU v1.0 proteins (43,790)
Database Path/mainlab/web/temp/db/cottongen/Gbi_V1.0.pep.fa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. bickii (G1) ZJU v1.0 Genome (13 chrom. and 432 scaffolds)

Human-Readable NameG. bickii (G1) ZJU v1.0 Genome (13 chrom. and 432 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/Gbi_V1.genome.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for G1_ZJU_v1
RegEx/^(\S+).*/
Link-out Typejbrowse

G. stocksii (E1) ZSTU v1.2_a1.1 Genome (13 chrom. and 114 scaffolds)

Human-Readable NameG. stocksii (E1) ZSTU v1.2_a1.1 Genome (13 chrom. and 114 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/E1_ZSTU_V1_genomic.blast.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for E1_ZSTU_v1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. stocksii (E1) ZSTU v1.2_a1.1 CDs (46,215)

Human-Readable Name-- G. stocksii (E1) ZSTU v1.2_a1.1 CDs (46,215)
Database Path/mainlab/web/temp/db/cottongen/E1_ZSTU_V1_cds.blast.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. stocksii (E1) ZSTU v1.2_a1.1 proteins (46,215)

Human-Readable Name-- G. stocksii (E1) ZSTU v1.2_a1.1 proteins (46,215)
Database Path/mainlab/web/temp/db/cottongen/E1_ZSTU_V1_protein.blast.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink