Add Standard LG/Chromosome Names to enhance data queries (9/22)

Standardized Names of Linkage Group (of genetic maps) and Chromosome (of whole genomes) have been added in MegaSearchs' Gene, Marker, QTL searches.  These standardized names allow users to find genes/markers/QTLs that are located on the same chromosome/linkage group as well as on different genetic maps or genomes.  Below is an example of using standardized names in MegaSearch QTL:

Example: To find seed cotton yield QTLs from tetraploid genetic maps chromosome 7 (At.07).

-- G. tomentosum (AD3) HAU v1.0 proteins (72,648)

Human-Readable Name-- G. tomentosum (AD3) HAU v1.0 proteins (72,648)
Database Path/mainlab/web/temp/db/cottongen/Gossypium_tomentosum.gene.pep
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. tomentosum AD3 HAU v1.0 CDs (72,648)

Human-Readable Name-- G. tomentosum AD3 HAU v1.0 CDs (72,648)
Database Path/mainlab/web/temp/db/cottongen/Gossypium_tomentosum.gene.cds
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. tomentosum AD3 HAU v1.0 Genome (26 chrom. and 888 scaffolds)

Human-Readable NameG. tomentosum AD3 HAU v1.0 Genome (26 chrom. and 888 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/Gossypium_tomentosum.Chr.v1.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for AD3 HAU v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. anomalum (B1) JAAS v1.2_a1.1 proteins (42,752)

Human-Readable Name-- G. anomalum (B1) JAAS v1.2_a1.1 proteins (42,752)
Database Path/mainlab/web/temp/db/cottongen/Gossypium.anomalum.V1.1.pep_modID.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. anomalum (B1) JAAS v1.2_a1.1 CDs (42,752)

Human-Readable Name-- G. anomalum (B1) JAAS v1.2_a1.1 CDs (42,752)
Database Path/mainlab/web/temp/db/cottongen/Gossypium.anomalum.V1.1.cds_modID.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink