-- G. herbaceum (A1-Wagad) USDA v1.0 CDs (39,100)

Human-Readable Name-- G. herbaceum (A1-Wagad) USDA v1.0 CDs (39,100)
Database Path/mainlab/web/temp/db/cottongen/A1.transcripts.wagad.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. herbaceum (A1-Wagad) USDA v1.0 proteins (39,100)

Human-Readable Name-- G. herbaceum (A1-Wagad) USDA v1.0 proteins (39,100)
Database Path/mainlab/web/temp/db/cottongen/A1.proteins.wagad.fa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. herbaceum (A1-Wagad) USDA v1.0 Genome (13 chrom.)

Human-Readable NameG. herbaceum (A1-Wagad) USDA v1.0 Genome (13 chrom.)
Database Path/mainlab/web/temp/db/cottongen/A1.wagad.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for A1_USDA wagad v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse

New SNP/Indel markers and genome locations available (11/22)

Over 25K CRI_A2 SNP/InDel markers and positions on Gossypium arboreum (A2) genome available.  Data can be accessed via Search Markers Or MegaSearch "Marker".

Project Information

The 50K Cotton SNP chip on the Affymetrix-Axiom platform with financial support from DBT (Govt. of India).

New map, QTL and phenotype data available (9/22)

An interspecies genetic map developed based on the cross of between two Indian cultivars with 88 QTLs of 15 yield component and fiber quality traits and phenotype data available. (9/30/22)